{ "type": "genome", "identifier": "GCF_013359945.1", "organism": "Paenibacillus agri", "title": "Paenibacillus agri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "chungang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013359945.1", "bioproject": "PRJNA224116", "biosample": "SAMN14987153", "wgs_master": "JABWCS000000000.1", "refseq_category": "reference genome", "taxid": "2744309", "species_taxid": "2744309", "organism_name": "Paenibacillus agri", "infraspecific_name": "strain=JW14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/18", "asm_name": "ASM1335994v1", "asm_submitter": "chungang university", "gbrs_paired_asm": "GCA_013359945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/359/945/GCF_013359945.1_ASM1335994v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6375712", "genome_size_ungapped": "6375712", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "221", "contig_count": "221", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013359945.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "5936", "protein_coding_gene_count": "5645", "non_coding_gene_count": "197", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-18", "dateModified": "2020-06-18", "datePublished": "2020-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus agri" ], "sample_taxid": [ "2744309" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yeong-wol" ], "sample_host_location_id": [], "data_size": "1.824 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6375712", "Number of Sequences": "221", "Longest Sequences (bp)": "591972", "N50 (bp)": "177271", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.1", "Number of CDSs": "5692", "Average Protein Length": "312.7", "Coding Ratio (%)": "83.8", "Number of rRNAs": "1", "Number of tRNAs": "90", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus agri", "strain": "strain=JW14", "accession": "GCA_013359945.1", "taxid": 2744309, "species_taxid": 2744309, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2068, "total_fragments": 2077, "ani_threshold": 95, 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"GCA_001012825.2", "taxid": 1306852, "species_taxid": 1306852, "relation_to_type": "type", "validated": true, "ani": 79.4241, "matched_fragments": 584, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sonchi", "strain": "strain=X19-5", "accession": "GCA_000316285.1", "taxid": 373687, "species_taxid": 373687, "relation_to_type": "type", "validated": true, "ani": 79.3911, "matched_fragments": 531, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus riograndensis", "strain": "strain=SBR5", "accession": "GCA_000224945.2", "taxid": 483937, "species_taxid": 483937, "relation_to_type": "type", "validated": true, "ani": 79.349, "matched_fragments": 493, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus jilunlii", "strain": "strain=DSM 23019", "accession": "GCA_001546055.1", "taxid": 682956, "species_taxid": 682956, "relation_to_type": "type", "validated": true, "ani": 79.3346, "matched_fragments": 626, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sonchi", "strain": "strain=LMG 24727", "accession": "GCA_016772475.1", "taxid": 373687, "species_taxid": 373687, "relation_to_type": "type", "validated": true, "ani": 79.3334, "matched_fragments": 624, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus borealis", "strain": "strain=DSM 13188", "accession": "GCA_000758665.1", "taxid": 160799, "species_taxid": 160799, "relation_to_type": "type", "validated": true, "ani": 79.3149, "matched_fragments": 655, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus silagei", "strain": "strain=DSM 101953", "accession": "GCA_017874735.1", "taxid": 1670801, "species_taxid": 1670801, "relation_to_type": "type", "validated": true, "ani": 79.1351, "matched_fragments": 579, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 79.101, "matched_fragments": 547, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tritici", "strain": "strain=LMG 29502", "accession": "GCA_013204885.1", "taxid": 1873425, "species_taxid": 1873425, "relation_to_type": "type", "validated": true, "ani": 79.0075, "matched_fragments": 606, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tengchongensis", "strain": "strain=SYSU G01003", "accession": "GCA_008973665.1", "taxid": 2608684, "species_taxid": 2608684, "relation_to_type": "type", "validated": true, "ani": 78.5145, "matched_fragments": 489, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sinensis", "strain": "strain=HN-1", "accession": "GCA_019904155.1", "taxid": 2834413, "species_taxid": 2834413, "relation_to_type": "type", "validated": true, "ani": 77.7943, "matched_fragments": 344, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus yonginensis", "strain": "strain=DCY84", "accession": "GCA_001685395.1", "taxid": 1462996, "species_taxid": 1462996, "relation_to_type": "type", "validated": true, "ani": 77.0137, "matched_fragments": 143, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pinistramenti", "strain": "strain=ASL46", "accession": "GCA_005869875.1", "taxid": 1768003, "species_taxid": 1768003, "relation_to_type": "type", "validated": true, "ani": 76.9184, "matched_fragments": 140, "total_fragments": 2077, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013359945.1", "gtdb_species": "s__Paenibacillus sp013359945", "ani": 100.0, "matched_fragments": 2068, "total_fragments": 2077, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001682855.1", "gtdb_species": "s__Paenibacillus sp001682855", "ani": 93.892, "matched_fragments": 1817, "total_fragments": 2077, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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