{ "type": "genome", "identifier": "GCF_013370205.1", "organism": "Actirhodobacter atriluteus", "title": "Actirhodobacter atriluteus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hohai Univercity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013370205.1", "bioproject": "PRJNA224116", "biosample": "SAMN15232752", "wgs_master": "JABWGV000000000.1", "refseq_category": "reference genome", "taxid": "2744473", "species_taxid": "2744473", "organism_name": "Actirhodobacter atriluteus", "infraspecific_name": "strain=HHU K3-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/23", "asm_name": "ASM1337020v1", "asm_submitter": "Hohai Univercity", "gbrs_paired_asm": "GCA_013370205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/370/205/GCF_013370205.1_ASM1337020v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2939611", "genome_size_ungapped": "2939611", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013370205.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "2866", "protein_coding_gene_count": "2792", "non_coding_gene_count": "53", "pubmed_id": "33847861" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-23", "dateModified": "2020-06-23", "datePublished": "2020-06-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Actirhodobacter atriluteus" ], "sample_taxid": [ "2744473" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yellow Sea" ], "sample_host_location_id": [], "data_size": "0.824 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2939611", "Number of Sequences": "23", "Longest Sequences (bp)": "1007690", "N50 (bp)": "676748", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "2774", "Average Protein Length": "317.8", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.4401, "matched_fragments": 394, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter zhengii", "strain": "strain=V18", "accession": "GCA_003584125.1", "taxid": 2307003, "species_taxid": 2307003, "relation_to_type": "type", "validated": true, "ani": 79.0427, "matched_fragments": 310, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gaetbuli", "strain": "strain=DSM 16225", "accession": "GCA_009827315.1", "taxid": 266952, "species_taxid": 266952, "relation_to_type": "type", "validated": true, "ani": 78.9758, "matched_fragments": 375, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 78.958, "matched_fragments": 377, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.9451, "matched_fragments": 388, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.9371, "matched_fragments": 413, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.8625, "matched_fragments": 376, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.8123, "matched_fragments": 358, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 78.8028, "matched_fragments": 412, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 78.6867, "matched_fragments": 340, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania vesicularis", "strain": "strain=1NDH10", "accession": "GCA_019711415.1", "taxid": 2867232, "species_taxid": 2867232, "relation_to_type": "type", "validated": true, "ani": 78.6864, "matched_fragments": 321, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 78.5901, "matched_fragments": 367, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.5876, "matched_fragments": 368, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania nanhaisediminis", "strain": "strain=CGMCC 1.7715", "accession": "GCA_900115585.1", "taxid": 604088, "species_taxid": 604088, "relation_to_type": "type", "validated": true, "ani": 78.5655, "matched_fragments": 345, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.5356, "matched_fragments": 307, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", "strain": "strain=6D36", "accession": "GCA_015529805.1", "taxid": 2782568, "species_taxid": 2782568, "relation_to_type": "type", "validated": true, "ani": 78.5079, "matched_fragments": 345, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus hydrothermalis", "strain": "strain=JLT1", "accession": "GCA_022378335.1", "taxid": 2867964, "species_taxid": 2867964, "relation_to_type": "type", "validated": true, "ani": 78.4742, "matched_fragments": 261, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella rigui", "strain": "strain=KCTC 42620", "accession": "GCA_003958625.1", "taxid": 1708790, "species_taxid": 1708790, "relation_to_type": "type", "validated": true, "ani": 78.4125, "matched_fragments": 323, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_000714795.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 78.3383, "matched_fragments": 354, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter litoralis", "strain": "strain=DSM 8509", "accession": "GCA_001719165.1", "taxid": 39960, "species_taxid": 39960, "relation_to_type": "type", "validated": true, "ani": 78.2932, "matched_fragments": 354, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter donghaensis", "strain": "strain=DSM 16220", "accession": "GCA_002155425.1", "taxid": 267135, "species_taxid": 267135, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2319, "matched_fragments": 340, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aerophila", "strain": "strain=GH25", "accession": "GCA_019711555.1", "taxid": 2867242, "species_taxid": 2867242, "relation_to_type": "type", "validated": true, "ani": 78.2156, "matched_fragments": 293, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter suaedae", "strain": "strain=GH3-15", "accession": "GCA_005434915.1", "taxid": 2545755, "species_taxid": 2545755, "relation_to_type": "type", "validated": true, "ani": 78.0073, "matched_fragments": 239, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium naphthalenivorans", "strain": "strain=NBRC 102051", "accession": "GCA_001590985.1", "taxid": 273168, "species_taxid": 273168, "relation_to_type": "type", "validated": true, "ani": 77.8056, "matched_fragments": 241, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 77.7787, "matched_fragments": 273, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella flava", "strain": "strain=MS1-4", "accession": "GCA_002870965.1", "taxid": 2055955, "species_taxid": 2055955, "relation_to_type": "type", "validated": true, "ani": 77.7546, "matched_fragments": 206, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteripontixanthobacter maritimus", "strain": "strain=HME9302", "accession": "GCA_003340475.1", "taxid": 2161824, "species_taxid": 2161824, "relation_to_type": "type", "validated": true, "ani": 77.7384, "matched_fragments": 246, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter luteolus", "strain": "strain=SW-109", "accession": "GCA_009828095.1", "taxid": 295089, "species_taxid": 295089, "relation_to_type": "type", "validated": true, "ani": 77.7018, "matched_fragments": 244, "total_fragments": 969, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013370205.1", "gtdb_species": "s__Actirhodobacter atriluteus", "ani": 100.0, "matched_fragments": 969, "total_fragments": 969, "gtdb_taxonomy": 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