{ "type": "genome", "identifier": "GCF_013371465.1", "organism": "Ensifer oleiphilus", "title": "Ensifer oleiphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center of Biotechnology RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013371465.1", "bioproject": "PRJNA224116", "biosample": "SAMN15146833", "wgs_master": "JABWDU000000000.1", "refseq_category": "reference genome", "taxid": "2742698", "species_taxid": "2742698", "organism_name": "Ensifer oleiphilus", "infraspecific_name": "strain=HO-A22", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/23", "asm_name": "ASM1337146v1", "asm_submitter": "Research Center of Biotechnology RAS", "gbrs_paired_asm": "GCA_013371465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/371/465/GCF_013371465.1_ASM1337146v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6762417", "genome_size_ungapped": "6762021", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013371465.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "6346", "protein_coding_gene_count": "6191", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-23", "dateModified": "2020-06-23", "datePublished": "2020-06-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Ensifer oleiphilus" ], "sample_taxid": [ "2742698" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Tatarstan, Nurlat region" ], "sample_host_location_id": [], "data_size": "1.886 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6762417", "Number of Sequences": "32", "Longest Sequences (bp)": "1411418", "N50 (bp)": "1120613", "Gap Ratio (%)": "0.005856", "GCcontent (%)": "61.7", "Number of CDSs": "6334", "Average Protein Length": "308.0", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ensifer sesbaniae", "strain": "strain=CCBAU 65729", "accession": "GCA_013283665.1", "taxid": 1214071, "species_taxid": 1214071, "relation_to_type": "type", "validated": true, "ani": 83.8142, "matched_fragments": 1366, 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80.7096, "matched_fragments": 902, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer alkalisoli", "strain": "strain=YIC4027", "accession": "GCA_008932245.1", "taxid": 1752398, "species_taxid": 1752398, "relation_to_type": "type", "validated": true, "ani": 80.6943, "matched_fragments": 946, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium giardinii", "strain": "strain=H152", "accession": "GCA_000379605.1", "taxid": 56731, "species_taxid": 56731, "relation_to_type": "type", "validated": true, "ani": 80.6082, "matched_fragments": 935, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 80.5735, "matched_fragments": 805, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella oryzae", "strain": "strain=Z-25", "accession": "GCA_023038235.1", "taxid": 2871820, "species_taxid": 2871820, "relation_to_type": "type", "validated": true, "ani": 80.4576, "matched_fragments": 803, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 80.4014, "matched_fragments": 802, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium croatiense", "strain": "strain=13T", "accession": "GCA_019793465.1", "taxid": 2867516, "species_taxid": 2867516, "relation_to_type": "type", "validated": true, "ani": 79.6282, "matched_fragments": 779, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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