{ "type": "genome", "identifier": "GCF_013371495.1", "organism": "Altererythrobacter lutimaris", "title": "Altererythrobacter lutimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013371495.1", "bioproject": "PRJNA224116", "biosample": "SAMN15207347", "wgs_master": "JABWTA000000000.1", "refseq_category": "reference genome", "taxid": "2743979", "species_taxid": "2743979", "organism_name": "Altererythrobacter lutimaris", "infraspecific_name": "strain=JGD-16", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/23", "asm_name": "ASM1337149v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_013371495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/371/495/GCF_013371495.1_ASM1337149v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2952860", "genome_size_ungapped": "2952850", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013371495.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2890", "protein_coding_gene_count": "2826", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-23", "dateModified": "2020-06-23", "datePublished": "2020-06-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Altererythrobacter lutimaris" ], "sample_taxid": [ "2743979" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Janggu-do" ], "sample_host_location_id": [], "data_size": "0.835 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2952860", "Number of Sequences": "33", "Longest Sequences (bp)": "2937629", "N50 (bp)": "2937629", "Gap Ratio (%)": "0.000339", "GCcontent (%)": "57.8", "Number of CDSs": "2835", "Average Protein Length": "316.6", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Altererythrobacter lutimaris", "strain": "strain=JGD-16", "accession": "GCA_013371495.1", "taxid": 2743979, "species_taxid": 2743979, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 979, "total_fragments": 979, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Altererythrobacter ishigakiensis", "strain": "strain=NBRC 107699", "accession": "GCA_001663155.1", "taxid": 476157, "species_taxid": 476157, "relation_to_type": "type", "validated": true, "ani": 78.3416, "matched_fragments": 267, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altererythrobacter ishigakiensis", "strain": "strain=ATCC BAA-2084", "accession": "GCA_007830695.1", "taxid": 476157, "species_taxid": 476157, "relation_to_type": "type", "validated": true, "ani": 78.328, "matched_fragments": 265, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 78.2974, "matched_fragments": 256, 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"below_threshold" }, { "organism_name": "Parerythrobacter jejuensis", "strain": "strain=JCM 16677", "accession": "GCA_009827995.1", "taxid": 795812, "species_taxid": 795812, "relation_to_type": "type", "validated": true, "ani": 77.8728, "matched_fragments": 252, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 77.8605, "matched_fragments": 246, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.8036, "matched_fragments": 173, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=JCM 20691", "accession": "GCA_002155655.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 77.7805, "matched_fragments": 250, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter colymbi", "strain": "strain=JCM 18338", "accession": "GCA_002155685.1", "taxid": 1161202, "species_taxid": 1161202, "relation_to_type": "type", "validated": true, "ani": 77.7598, "matched_fragments": 225, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania sphaerica", "strain": "strain=GH29", "accession": "GCA_019711595.1", "taxid": 2867243, "species_taxid": 2867243, "relation_to_type": "type", "validated": true, "ani": 77.727, "matched_fragments": 261, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=DSM 11032", "accession": "GCA_900143235.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 77.7205, "matched_fragments": 249, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.7004, "matched_fragments": 231, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania algicida", "strain": "strain=KEMB 9005-328", "accession": "GCA_009828025.1", "taxid": 1836209, "species_taxid": 1836209, "relation_to_type": "type", "validated": true, "ani": 77.6997, "matched_fragments": 190, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 77.6245, "matched_fragments": 196, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.6242, "matched_fragments": 234, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 77.5303, "matched_fragments": 190, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 77.3997, "matched_fragments": 211, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis italica", "strain": "strain=DSM 25229", "accession": "GCA_011926545.1", "taxid": 1129133, "species_taxid": 1129133, "relation_to_type": "type", "validated": true, "ani": 77.3259, "matched_fragments": 101, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis alaskensis", "strain": "strain=RB2256", "accession": "GCA_000013985.1", "taxid": 117207, "species_taxid": 117207, "relation_to_type": "type", "validated": true, "ani": 77.1789, "matched_fragments": 93, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis indica", "strain": "strain=DS15", "accession": "GCA_900188185.1", "taxid": 436663, "species_taxid": 436663, "relation_to_type": "type", "validated": true, "ani": 77.0557, "matched_fragments": 95, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 76.9604, "matched_fragments": 129, "total_fragments": 979, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013371495.1", "gtdb_species": "s__Erythrobacter sp013371495", "ani": 100.0, "matched_fragments": 979, "total_fragments": 979, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_011524425.1", "gtdb_species": "s__Erythrobacter sp011524425", "ani": 79.0489, "matched_fragments": 291, "total_fragments": 979, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003149575.1", "gtdb_species": "s__Erythrobacter sp003149575", "ani": 78.4372, "matched_fragments": 273, "total_fragments": 979, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001663155.1", 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77.9151, "matched_fragments": 183, "total_fragments": 979, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009363635.1", "gtdb_species": "s__Erythrobacter sp009363635", "ani": 77.7903, "matched_fragments": 260, "total_fragments": 979, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001557325.1", "gtdb_species": "s__Erythrobacter donghaensis_B", "ani": 77.7747, 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"optimum_ph": 7.083, "genome_size": 2901501.907, "gc_content": 62.754, "coding_genes": 2720.761, "rRNA16S_genes": 1.142, "tRNA_genes": 45.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.2, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Altererythrobacter", "lutimaris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }