{
    "type": "genome",
    "identifier": "GCF_013373795.3",
    "organism": "Bradyrhizobium quebecense",
    "title": "Bradyrhizobium quebecense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Agriculture and Agri-Food Canada",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013373795.3",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15299083",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "2748629",
        "species_taxid": "2748629",
        "organism_name": "Bradyrhizobium quebecense",
        "infraspecific_name": "strain=66S1MB, /ecotype=symbiovar septentrionalis",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/12/15",
        "asm_name": "ASM1337379v3",
        "asm_submitter": "Agriculture and Agri-Food Canada",
        "gbrs_paired_asm": "GCA_013373795.3",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/373/795/GCF_013373795.3_ASM1337379v3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9172345",
        "genome_size_ungapped": "9172345",
        "gc_percent": "64.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013373795.3-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "8745",
        "protein_coding_gene_count": "8266",
        "non_coding_gene_count": "58",
        "pubmed_id": "34106824"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-12-15",
    "dateModified": "2021-12-15",
    "datePublished": "2021-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bradyrhizobium quebecense"
        ],
        "sample_taxid": [
            "2748629"
        ],
        "sample_host_organism": [
            "Glycine max cv. AC Glengarry"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Gatineau, Quebec"
        ],
        "sample_host_location_id": [],
        "data_size": "2.525 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9172345",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "8740742",
        "N50 (bp)": "8740742",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.8",
        "Number of CDSs": "8922",
        "Average Protein Length": "291.6",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bradyrhizobium quebecense",
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                "accession": "GCA_013373795.3",
                "taxid": 2748629,
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                "relation_to_type": "type",
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                "ani": 100.0,
                "matched_fragments": 3052,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bradyrhizobium altum",
                "strain": "strain=Pear77",
                "accession": "GCA_020889705.1",
                "taxid": 1571202,
                "species_taxid": 1571202,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.3044,
                "matched_fragments": 2126,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium embrapense",
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                "accession": "GCA_001189235.2",
                "taxid": 630921,
                "species_taxid": 630921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.025,
                "matched_fragments": 2186,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium septentrionale",
                "strain": "strain=1S1",
                "accession": "GCA_011516645.4",
                "taxid": 1404411,
                "species_taxid": 1404411,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.2128,
                "matched_fragments": 2318,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium oropedii",
                "strain": "strain=Pear76",
                "accession": "GCA_020889685.1",
                "taxid": 1571201,
                "species_taxid": 1571201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1669,
                "matched_fragments": 2061,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium tropiciagri",
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                "accession": "GCA_001189845.1",
                "taxid": 312253,
                "species_taxid": 312253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1587,
                "matched_fragments": 2185,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium acaciae",
                "strain": "strain=10BB",
                "accession": "GCA_020889785.1",
                "taxid": 2683706,
                "species_taxid": 2683706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9214,
                "matched_fragments": 2064,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium uaiense",
                "strain": "strain=UFLA03-164",
                "accession": "GCA_010811875.1",
                "taxid": 2594946,
                "species_taxid": 2594946,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9042,
                "matched_fragments": 2052,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium elkanii",
                "strain": "strain=USDA 76",
                "accession": "GCA_023278185.1",
                "taxid": 29448,
                "species_taxid": 29448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.885,
                "matched_fragments": 2216,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium elkanii",
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                "accession": "GCA_000379145.1",
                "taxid": 29448,
                "species_taxid": 29448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.868,
                "matched_fragments": 2200,
                "total_fragments": 3056,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_013373795.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium",
                "ani_circumscription_radius": 95.1616,
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                "min_intra_species_ani": "95.60",
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                "status": "conclusive"
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            {
                "accession": "GCF_900105845.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium",
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                "num_clustered_genomes": 5,
                "status": "-"
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            {
                "accession": "GCF_002532045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
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            {
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "quebecense"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}