{ "tc_result": [ { "organism_name": "Endobacter medicaginis", "strain": "strain=LMG 26838", "accession": "GCA_013376135.1", "taxid": 1181271, "species_taxid": 1181271, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 704, "total_fragments": 717, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Endobacter medicaginis", "strain": "strain=CECT 8088", "accession": "GCA_014192375.1", "taxid": 1181271, "species_taxid": 1181271, "relation_to_type": "type", "validated": true, "ani": 99.9874, "matched_fragments": 710, "total_fragments": 717, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acidisphaera rubrifaciens", "strain": "strain=HS-AP3", "accession": "GCA_000964365.1", "taxid": 50715, "species_taxid": 50715, "relation_to_type": "type", "validated": true, "ani": 78.5658, "matched_fragments": 154, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter nitrogenifigens", "strain": "strain=DSM 23921", "accession": "GCA_000429165.1", "taxid": 285268, "species_taxid": 285268, "relation_to_type": "type", "validated": true, "ani": 78.4968, "matched_fragments": 126, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter dulcium", "strain": "strain=LMG 1728", "accession": "GCA_014174165.1", "taxid": 2729096, "species_taxid": 2729096, "relation_to_type": "type", "validated": true, "ani": 78.4952, "matched_fragments": 214, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter nitrogenifigens", "strain": "strain=NBRC 105050", "accession": "GCA_007991375.1", "taxid": 285268, "species_taxid": 285268, "relation_to_type": "type", "validated": true, "ani": 78.4875, "matched_fragments": 121, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=LMG 7603", "accession": "GCA_014174315.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 78.3459, "matched_fragments": 219, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter liquefaciens", "strain": "strain=LMG 1382", "accession": "GCA_014174285.1", "taxid": 89584, "species_taxid": 89584, "relation_to_type": "type", "validated": true, "ani": 78.3239, "matched_fragments": 207, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5; ATCC 49037", "accession": "GCA_000021325.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 78.3212, "matched_fragments": 224, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconacetobacter diazotrophicus", "strain": "strain=PAl 5", "accession": "GCA_000067045.1", "taxid": 33996, "species_taxid": 33996, "relation_to_type": "type", "validated": true, "ani": 78.2903, "matched_fragments": 228, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 78.0578, "matched_fragments": 238, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 77.9513, "matched_fragments": 192, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=NCTC13291", "accession": "GCA_900455935.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 77.6305, "matched_fragments": 188, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 77.5124, "matched_fragments": 191, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter garciniae", "strain": "strain=TBRC 12339", "accession": "GCA_017377735.1", "taxid": 2817435, "species_taxid": 2817435, "relation_to_type": "type", "validated": true, "ani": 77.299, "matched_fragments": 117, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elioraea tepida", "strain": "strain=MS-P2", "accession": "GCA_019203965.1", "taxid": 2843330, "species_taxid": 2843330, "relation_to_type": "type", "validated": true, "ani": 77.2525, "matched_fragments": 138, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 77.1621, "matched_fragments": 175, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 77.1394, "matched_fragments": 157, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium cerastii", "strain": "strain=DSM 23679", "accession": "GCA_022179125.1", "taxid": 932741, "species_taxid": 932741, "relation_to_type": "type", "validated": true, "ani": 76.9007, "matched_fragments": 127, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 76.5219, "matched_fragments": 153, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 76.4098, "matched_fragments": 141, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 76.2976, "matched_fragments": 127, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 76.2969, "matched_fragments": 90, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014192375.1", "gtdb_species": "s__Endobacter medicaginis", "ani": 99.9874, "matched_fragments": 710, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Endobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_903844135.1", "gtdb_species": "s__Lichenicola sp903844135", "ani": 79.5135, "matched_fragments": 301, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.79", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005844085.1", "gtdb_species": "s__Lichenicoccus roseus", "ani": 79.2855, "matched_fragments": 284, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000964365.1", "gtdb_species": "s__Acidisphaera rubrifaciens", "ani": 78.5392, "matched_fragments": 155, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014174375.1", "gtdb_species": "s__Gluconacetobacter asukensis", "ani": 78.4052, "matched_fragments": 225, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 96.0437, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003133265.1", "gtdb_species": "s__PALSA-911 sp003133265", "ani": 78.3965, "matched_fragments": 158, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__PALSA-911", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013201075.1", "gtdb_species": "s__Lichenicola cladoniae", "ani": 78.3874, "matched_fragments": 276, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Lichenicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014174355.1", "gtdb_species": "s__Gluconacetobacter azotocaptans", "ani": 78.3722, "matched_fragments": 199, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000021325.1", "gtdb_species": "s__Gluconacetobacter diazotrophicus", "ani": 78.338, "matched_fragments": 223, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Gluconacetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903907955.1", "gtdb_species": "s__BOG-930 sp903907955", "ani": 78.296, "matched_fragments": 186, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_008630155.1", "gtdb_species": "s__Rhodovastum atsumiense", "ani": 78.0929, "matched_fragments": 237, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodovastum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001899585.1", "gtdb_species": "s__70-18 sp001899585", "ani": 78.0695, "matched_fragments": 235, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__70-18", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000164635.1", "gtdb_species": "s__Roseomonas cervicalis", "ani": 77.9524, "matched_fragments": 192, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Roseomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002906255.1", "gtdb_species": "s__Komagataeibacter maltaceti", "ani": 77.8792, "matched_fragments": 154, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Komagataeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019240395.1", "gtdb_species": "s__JAFAYA01 sp019240395", "ani": 77.6676, "matched_fragments": 200, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__JAFAYA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003258945.1", "gtdb_species": "s__Paracraurococcus frigidaeris", "ani": 77.6565, "matched_fragments": 238, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Paracraurococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903918195.1", "gtdb_species": "s__BOG-930 sp903918195", "ani": 77.5752, "matched_fragments": 186, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__BOG-930", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004761865.1", "gtdb_species": "s__Crenalkalicoccus roseus", "ani": 77.5161, "matched_fragments": 208, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Crenalkalicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903924855.1", "gtdb_species": "s__CAIQQQ01 sp903924855", "ani": 77.2882, "matched_fragments": 146, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__CAIQQQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.77", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903944925.1", "gtdb_species": "s__Rhodopila sp903944925", "ani": 77.2593, "matched_fragments": 152, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903915725.1", "gtdb_species": "s__Rhodopila sp903915725", "ani": 76.8036, "matched_fragments": 153, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Rhodopila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" } ] }