# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_25	LOCUS_00250	sequence1:27398..28096(+)	internal_stop_codon	28094..28096(+)		WP_038419008.1	peptidoglycan-binding protein	100.0	44.9	99.1
MGA_26	LOCUS_00260	sequence1:28130..28951(+)	internal_stop_codon	28094..28096(+)		WP_038419008.1	peptidoglycan-binding protein	100.0	52.8	98.2
MGA_59	LOCUS_00590	sequence1:56506..57183(+)	frameshift		56266	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_75	LOCUS_00750	sequence1:69202..69561(-)	frameshift,internal_stop_codon	69570..69572(-)	69614	WP_013097398.1	phage major capsid protein, P2 family	100.0	35.0	99.2
MGA_76	LOCUS_00760	sequence1:69606..70226(-)	frameshift,internal_stop_codon	69570..69572(-)	69614	WP_013097398.1	phage major capsid protein, P2 family	100.0	60.6	98.1
MGA_79	LOCUS_00790	sequence1:72787..73008(+)	frameshift		72760,72955	WP_013097400.1	terminase family protein	76.7	9.5	98.2
MGA_92	LOCUS_00920	sequence1:80698..81039(+)	frameshift		81003	WP_013097414.1	tyrosine-type recombinase/integrase	92.0	29.8	100.0
MGA_93	LOCUS_00930	sequence1:81009..81746(+)	frameshift		81003	WP_013097414.1	tyrosine-type recombinase/integrase	100.0	70.2	100.0
MGA_121	LOCUS_01210	sequence1:110651..110839(-)	frameshift		110843	WP_015367564.1	LacI family DNA-binding transcriptional regulator	98.4	17.1	75.4
MGA_122	LOCUS_01220	sequence1:110823..111713(-)	frameshift		110843	WP_015367564.1	LacI family DNA-binding transcriptional regulator	98.0	81.2	75.5
MGA_132	LOCUS_01320	sequence1:124854..125879(-)	frameshift		125941	WP_013097454.1	DHA2 family efflux MFS transporter permease subunit	100.0	65.2	98.5
MGA_133	LOCUS_01330	sequence1:125879..126424(-)	frameshift		125941	WP_013097454.1	DHA2 family efflux MFS transporter permease subunit	89.0	30.8	100.0
MGA_158	LOCUS_01580	sequence1:152077..152889(-)	frameshift		152984	WP_089600859.1	IS3 family transposase	100.0	70.7	98.9
MGA_178	LOCUS_01780	sequence1:172634..172921(+)	frameshift		172876	WP_013097498.1	ATP-binding cassette domain-containing protein	87.4	34.6	98.8
MGA_179	LOCUS_01790	sequence1:172936..173355(+)	frameshift		172876	WP_013097498.1	ATP-binding cassette domain-containing protein	100.0	57.9	99.3
MGA_213	LOCUS_02130	sequence1:207839..209119(-)	partial			WP_202694179.1	cell envelope integrity protein TolA	30.0	30.3	85.2
MGA_291	LOCUS_02910	sequence1:297107..297388(+)	partial			WP_029882131.1	fluoride efflux transporter CrcB	100.0	73.2	98.9
MGA_347	LOCUS_03470	sequence1:359352..360944(-)	frameshift		359630	WP_013097652.1	acetolactate synthase AlsS	83.0	78.7	98.9
MGA_361	LOCUS_03610	sequence1:374061..374300(-)	partial			WP_038418863.1	HlyD family secretion protein	98.7	27.2	96.2
MGA_365	LOCUS_03650	sequence1:376810..377022(+)	partial			WP_011389704.1	helix-turn-helix transcriptional regulator	94.3	24.1	72.7
MGA_402	LOCUS_04020	sequence1:416092..416454(+)	partial			WP_013097704.1	glucosyltransferase domain-containing protein	100.0	24.0	99.2
MGA_448	LOCUS_04480	sequence1:448734..449111(-)	partial			WP_013095955.1	toxin YdaT family protein	100.0	69.1	99.2
MGA_463	LOCUS_04630	sequence1:456094..456285(+)	partial			WP_032665755.1	TraR/DksA family transcriptional regulator	73.0	63.9	89.1
MGA_491	LOCUS_04910	sequence1:480671..481363(-)	frameshift		481374	WP_013095915.1	ABC transporter permease	100.0	28.6	93.5
MGA_492	LOCUS_04920	sequence1:481336..483084(-)	frameshift		481371	WP_013095915.1	ABC transporter permease	99.3	71.9	87.4
MGA_542	LOCUS_05420	sequence1:534724..535224(+)	frameshift		534703	WP_013095873.1	acyl-CoA thioesterase II	100.0	58.0	100.0
MGA_598	LOCUS_05980	sequence1:588298..588660(-)	frameshift		588691	WP_013095828.1	maltodextrin glucosidase	100.0	19.9	91.7
MGA_599	LOCUS_05990	sequence1:588662..590110(-)	frameshift		588691	WP_013095828.1	maltodextrin glucosidase	98.1	78.3	100.0
MGA_642	LOCUS_06420	sequence1:635732..636127(-)	frameshift		635779	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_669	LOCUS_06690	sequence1:664179..664337(-)	partial			WP_000788776.1	hypothetical protein	71.2	74.0	78.4
MGA_671	LOCUS_06710	sequence1:666941..667213(-)	partial			WP_012602735.1	ogr/Delta-like zinc finger family protein	85.6	72.0	62.3
MGA_675	LOCUS_06750	sequence1:670811..671014(-)	partial			WP_202673960.1	host cell division inhibitor Icd-like protein	100.0	35.3	88.1
MGA_678	LOCUS_06780	sequence1:673409..673609(-)	partial			WP_112216314.1	AlpA family transcriptional regulator	74.2	62.0	63.3
MGA_689	LOCUS_06890	sequence1:685028..685615(-)	partial			WP_013095739.1	IS4 family transposase	100.0	49.9	100.0
MGA_713	LOCUS_07130	sequence1:709286..709765(+)	partial			WP_013095717.1	hypothetical protein	100.0	72.3	99.4
MGA_732	LOCUS_07320	sequence1:731072..732019(-)	partial			WP_001417799.1	filamentous hemagglutinin N-terminal domain-containing protein	94.3	23.4	72.7
MGA_765	LOCUS_07640	sequence1:780514..781782(-)	frameshift		781829	WP_013095667.1	lysine decarboxylase LdcC	100.0	59.4	99.8
MGA_766	LOCUS_07650	sequence1:781791..782645(-)	frameshift		781826	WP_013095667.1	lysine decarboxylase LdcC	96.1	38.5	100.0
MGA_965	LOCUS_09640	sequence1:1012859..1013062(-)	frameshift		1013058	WP_013095478.1	DUF1435 domain-containing protein	98.5	74.2	100.0
MGA_966	LOCUS_09650	sequence1:1013648..1014406(+)	frameshift		1013409	WP_038418641.1	GGDEF domain-containing protein	100.0	71.2	98.0
MGA_972	LOCUS_09710	sequence1:1019773..1020141(+)	partial			WP_029882175.1	threonine/serine exporter ThrE family protein	92.6	43.8	99.1
MGA_974	LOCUS_09730	sequence1:1021208..1021615(+)	partial			WP_029882175.1	threonine/serine exporter ThrE family protein	100.0	52.3	100.0
MGA_983	LOCUS_09820	sequence1:1028351..1028704(+)	frameshift		1028692	WP_013095458.1	GNAT family N-acetyltransferase	97.4	66.3	100.0
MGA_991	LOCUS_09900	sequence1:1036453..1037103(+)	frameshift		1036451	WP_015704294.1	4-hydroxy-2-oxoheptanedioate aldolase	100.0	81.5	87.0
MGA_1000	LOCUS_09990	sequence1:1046855..1047442(-)	partial			WP_013098676.1	IS4 family transposase	100.0	49.9	100.0
MGA_1046	LOCUS_10450	sequence1:1090284..1091927(-)	internal_stop_codon	1092003..1092005(-)		WP_000783716.1	primase-like DNA-binding domain-containing protein	100.0	70.4	91.2
MGA_1047	LOCUS_10460	sequence1:1092003..1092617(-)	internal_stop_codon	1092003..1092005(-)		WP_000783716.1	primase-like DNA-binding domain-containing protein	100.0	26.3	87.3
MGA_1050	LOCUS_10490	sequence1:1093173..1093505(-)	partial			WP_000973389.1	host cell division inhibitor Icd-like protein	98.2	58.4	80.6
MGA_1056	LOCUS_10550	sequence1:1097636..1098094(-)	partial			WP_013087110.1	IS5-like element IS903B family transposase	96.1	45.3	100.0
MGA_1058	LOCUS_10570	sequence1:1098954..1099349(-)	frameshift		1099001	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_1059	LOCUS_10580	sequence1:1099398..1099955(-)	partial			WP_013087110.1	IS5-like element IS903B family transposase	97.8	56.2	100.0
MGA_1062	LOCUS_10610	sequence1:1101546..1101887(-)	partial			WP_193821696.1	integrase arm-type DNA-binding domain-containing protein	99.1	26.6	93.8
MGA_1063	LOCUS_10620	sequence1:1101931..1102761(-)	frameshift		1102793	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_1093	LOCUS_10920	sequence1:1137573..1138823(-)	frameshift		1138858	WP_015704203.1	PRD domain-containing protein	99.5	65.1	81.6
MGA_1094	LOCUS_10930	sequence1:1138724..1139482(-)	frameshift		1138858	WP_015704203.1	PRD domain-containing protein	82.5	32.7	75.0
MGA_1096	LOCUS_10950	sequence1:1140874..1141503(-)	frameshift		1140930	WP_013095353.1	KDGP aldolase family protein	91.4	77.6	100.0
MGA_1137	LOCUS_11360	sequence1:1184767..1186104(-)	partial			WP_013095318.1	beta-ketoacyl synthase	100.0	70.4	98.9
MGA_1222	LOCUS_12210	sequence1:1269290..1269967(+)	frameshift		1269050	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_1224	LOCUS_12230	sequence1:1270538..1270933(+)	frameshift		1270885	WP_174850133.1	IS3 family transposase	90.8	29.6	92.4
MGA_1225	LOCUS_12240	sequence1:1270891..1271772(+)	frameshift		1270885	WP_174850133.1	IS3 family transposase	100.0	72.9	99.7
MGA_1246	LOCUS_12450	sequence1:1294175..1295521(-)	frameshift		1295478	WP_013095214.1	FAD-dependent oxidoreductase	96.9	78.6	100.0
MGA_1251	LOCUS_12500	sequence1:1298298..1298951(+)	frameshift		1298034	WP_152858326.1	IS3 family transposase	100.0	55.4	98.6
MGA_1271	LOCUS_12700	sequence1:1312013..1312666(-)	frameshift		1312929	WP_152858326.1	IS3 family transposase	100.0	55.4	98.6
MGA_1273	LOCUS_12720	sequence1:1313250..1313621(+)	partial			WP_167492899.1	phosphatase	96.7	70.0	83.2
MGA_1304	LOCUS_13030	sequence1:1341902..1342117(-)	frameshift		1342167	WP_013095166.1	plasmid transfer protein	100.0	24.9	98.6
MGA_1305	LOCUS_13040	sequence1:1342147..1342758(-)	frameshift		1342164	WP_013095166.1	plasmid transfer protein	97.5	69.5	100.0
MGA_1318	LOCUS_13170	sequence1:1356193..1356336(-)	partial			WP_000405248.1	GNAT family N-acetyltransferase	97.9	28.8	80.4
MGA_1336	LOCUS_13340	sequence1:1372263..1373093(+)	frameshift		1372230	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_1338	LOCUS_13360	sequence1:1374602..1375093(-)	internal_stop_codon	1375106..1375108(-)		WP_010723085.1	IS5-like element IS5 family transposase	100.0	48.2	99.4
MGA_1339	LOCUS_13370	sequence1:1375106..1375510(-)	internal_stop_codon	1375106..1375108(-)		WP_001310555.1	IS5-like element IS5 family transposase	100.0	39.6	99.3
MGA_1341	LOCUS_13390	sequence1:1376192..1377004(+)	frameshift		1376096	WP_089600859.1	IS3 family transposase	100.0	70.7	98.9
MGA_1387	LOCUS_13830	sequence1:1424761..1425084(-)	partial			WP_013095099.1	DDRRRQL repeat protein YjdP	44.9	44.9	95.8
MGA_1395	LOCUS_13910	sequence1:1432561..1433148(+)	partial			WP_013098640.1	IS4 family transposase	100.0	49.9	100.0
MGA_1460	LOCUS_14550	sequence1:1501818..1502120(+)	internal_stop_codon	1502118..1502120(+)		WP_105530349.1	putative addiction module antidote protein	100.0	50.5	61.0
MGA_1536	LOCUS_15290	sequence1:1590342..1590914(-)	partial			WP_014830204.1	protein bax	100.0	69.3	100.0
MGA_1564	LOCUS_15570	sequence1:1622899..1623036(+)	internal_stop_codon	1623034..1623036(+)		WP_000665687.1	YibL family ribosome-associated protein	100.0	37.5	84.4
MGA_1565	LOCUS_15580	sequence1:1623061..1623261(+)	internal_stop_codon	1623034..1623036(+)		WP_015369186.1	YibL family ribosome-associated protein	100.0	55.0	89.4
MGA_1567	LOCUS_15600	sequence1:1623712..1624542(+)	frameshift		1623679	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_1568	LOCUS_15610	sequence1:1624543..1626009(+)	partial			WP_152082941.1	DUF3320 domain-containing protein	98.0	25.8	95.2
MGA_1584	LOCUS_15770	sequence1:1641307..1641498(+)	partial			WP_111964309.1	hypothetical protein	100.0	20.7	90.5
MGA_1585	LOCUS_15780	sequence1:1641560..1641955(+)	frameshift		1641907	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_1587	LOCUS_15800	sequence1:1642892..1643572(+)	partial			WP_111964309.1	hypothetical protein	100.0	74.3	89.8
MGA_1630	LOCUS_16220	sequence1:1685307..1685867(+)	internal_stop_codon	1685865..1685867(+)		WP_019212714.1	RhuM family protein	100.0	54.4	89.8
MGA_1631	LOCUS_16230	sequence1:1685964..1686335(+)	internal_stop_codon	1685865..1685867(+)		WP_001280585.1	RhuM family protein	100.0	35.7	80.5
MGA_1656	LOCUS_16480	sequence1:1709127..1709552(-)	partial			WP_013094845.1	hypothetical protein	100.0	65.0	100.0
MGA_1704	LOCUS_16960	sequence1:1760210..1760527(+)	partial			WP_032644228.1	D-serine transporter DsdX	81.0	19.1	83.5
MGA_1731	LOCUS_17230	sequence1:1789852..1790142(+)	partial			WP_120159032.1	MFS transporter	49.0	13.6	71.7
MGA_1758	LOCUS_17500	sequence1:1816480..1817328(-)	frameshift		1817378	WP_013099399.1	ATPase RavA	100.0	56.6	93.3
MGA_1759	LOCUS_17510	sequence1:1817373..1817975(-)	frameshift		1817378	WP_013099399.1	ATPase RavA	99.5	40.0	100.0
MGA_1760	LOCUS_17520	sequence1:1818198..1819016(+)	frameshift		1819013	WP_013099398.1	low affinity potassium transporter Kup	98.9	43.2	100.0
MGA_1761	LOCUS_17530	sequence1:1819060..1820061(+)	frameshift		1819013	WP_013099398.1	low affinity potassium transporter Kup	100.0	53.7	96.4
MGA_1819	LOCUS_18080	sequence1:1883624..1883833(+)	frameshift		1883827	WP_013099342.1	MFS transporter	100.0	16.2	89.9
MGA_1820	LOCUS_18090	sequence1:1883830..1884900(+)	frameshift		1883827	WP_013099342.1	MFS transporter	100.0	83.8	94.4
MGA_1877	LOCUS_18650	sequence1:1951833..1952228(+)	frameshift		1952180	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_1987	LOCUS_19720	sequence1:2082670..2083158(+)	partial			WP_000090707.1	TnsA endonuclease N-terminal domain-containing protein	100.0	57.9	100.0
MGA_1997	LOCUS_19820	sequence1:2097046..2097810(+)	partial			WP_000475506.1	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	100.0	55.1	98.4
MGA_1999	LOCUS_19840	sequence1:2098684..2099079(-)	frameshift		2098731	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_2000	LOCUS_19850	sequence1:2099250..2099783(+)	partial			WP_001507116.1	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	100.0	38.4	90.4
MGA_2015	LOCUS_20000	sequence1:2114843..2116009(+)	internal_stop_codon	2114768..2114770(+)		WP_001211180.1	copper resistance membrane spanning protein PcoS	100.0	83.3	100.0
MGA_2033	LOCUS_20180	sequence1:2133085..2133417(-)	internal_stop_codon	2133418..2133420(-)		WP_000284366.1	4'-phosphopantetheinyl transferase AcpT	85.5	49.5	73.7
MGA_2034	LOCUS_20190	sequence1:2133418..2133702(-)	internal_stop_codon	2133418..2133420(-)		WP_000285765.1	4'-phosphopantetheinyl transferase AcpT	100.0	47.2	71.3
MGA_2106	LOCUS_20910	sequence1:2211433..2211924(-)	partial			WP_038420751.1	DNA utilization protein GntX	100.0	71.8	91.4
MGA_2118	LOCUS_21030	sequence1:2221931..2222518(+)	partial			WP_013098640.1	IS4 family transposase	99.5	49.6	100.0
MGA_2151	LOCUS_21360	sequence1:2257958..2258152(-)	partial			WP_001303699.1	hypothetical protein	82.8	71.8	62.3
MGA_2153	LOCUS_21380	sequence1:2258714..2259301(-)	partial			WP_013098640.1	IS4 family transposase	100.0	49.9	100.0
MGA_2226	LOCUS_22110	sequence1:2308530..2308682(+)	internal_stop_codon	2308680..2308682(+)		WP_038420723.1	DUF1488 domain-containing protein	100.0	61.0	100.0
MGA_2342	LOCUS_23260	sequence1:2440651..2440842(-)	frameshift		2440901	WP_013098907.1	peptidase U32 family protein	100.0	19.0	98.4
MGA_2343	LOCUS_23270	sequence1:2440839..2441645(-)	frameshift		2440901	WP_013098907.1	peptidase U32 family protein	92.9	75.2	97.2
MGA_2346	LOCUS_23300	sequence1:2442865..2443020(-)	partial			WP_013098904.1	GIY-YIG nuclease family protein	100.0	46.8	98.0
MGA_2352	LOCUS_23360	sequence1:2446680..2447216(-)	frameshift		2446751	WP_003861754.1	DnaA initiator-associating protein DiaA	87.1	79.1	100.0
MGA_2407	LOCUS_23910	sequence1:2506097..2506246(-)	partial			WP_020689402.1	hypothetical protein	100.0	50.5	100.0
MGA_2467	LOCUS_24510	sequence1:2567219..2567392(+)	partial			WP_223151184.1	Rz1-like lysis system protein LysC	100.0	69.5	98.2
MGA_2488	LOCUS_24720	sequence1:2586506..2586955(-)	frameshift		2586957	WP_029883055.1	response regulator transcription factor	100.0	65.9	100.0
MGA_2489	LOCUS_24730	sequence1:2586943..2587185(-)	frameshift		2586957	WP_029883055.1	response regulator transcription factor	100.0	35.4	93.8
MGA_2535	LOCUS_25190	sequence1:2637592..2638350(+)	frameshift		2638293	WP_013098731.1	oligosaccharide MFS transporter	92.9	55.6	99.1
MGA_2536	LOCUS_25200	sequence1:2638301..2638861(+)	frameshift		2638293	WP_013098731.1	oligosaccharide MFS transporter	100.0	44.2	100.0
MGA_2573	LOCUS_25570	sequence1:2676518..2676826(+)	partial			WP_013098695.1	LuxR C-terminal-related transcriptional regulator	100.0	58.3	100.0
MGA_2574	LOCUS_25580	sequence1:2676908..2678533(-)	internal_stop_codon	2678669..2678671(-)		WP_046463799.1	autotransporter domain-containing protein	69.1	38.0	43.8
MGA_2575	LOCUS_25590	sequence1:2678669..2679925(-)	internal_stop_codon	2678669..2678671(-)		WP_046463799.1	autotransporter domain-containing protein	89.2	36.6	23.2
MGA_2596	LOCUS_25800	sequence1:2699709..2700296(+)	partial			WP_013098676.1	IS4 family transposase	100.0	49.9	100.0
MGA_2636	LOCUS_26200	sequence1:2735430..2736017(+)	partial			WP_013098640.1	IS4 family transposase	100.0	49.9	100.0
MGA_2669	LOCUS_26530	sequence1:2771325..2772206(+)	frameshift		2771182	WP_095908218.1	peptide chain release factor 2	100.0	80.3	99.3
MGA_2676	LOCUS_26600	sequence1:2777026..2777703(+)	frameshift		2776786	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_2681	LOCUS_26650	sequence1:2780624..2781436(-)	frameshift		2781531	WP_089600859.1	IS3 family transposase	100.0	70.7	98.9
MGA_2685	LOCUS_26690	sequence1:2782959..2783354(-)	frameshift		2783006	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_2695	LOCUS_26790	sequence1:2791866..2792543(+)	partial			WP_013098594.1	S-type pyocin domain-containing protein	100.0	58.1	90.2
MGA_2798	LOCUS_27820	sequence1:2906780..2907610(+)	partial			WP_023620533.1	murein hydrolase activator NlpD	100.0	73.8	93.1
MGA_3080	LOCUS_30610	sequence1:3199256..3200086(+)	frameshift		3199223	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_3096	LOCUS_30770	sequence1:3217512..3217730(+)	partial			WP_001576297.1	membrane protein	61.1	51.2	63.6
MGA_3150	LOCUS_31310	sequence1:3279219..3280205(+)	partial			WP_013098196.1	cell division protein ZipA	45.1	45.1	100.0
MGA_3185	LOCUS_31650	sequence1:3313467..3314180(-)	partial			WP_013098167.1	hypothetical protein	100.0	58.8	100.0
MGA_3188	LOCUS_31680	sequence1:3315765..3316595(+)	frameshift		3315732	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_3189	LOCUS_31690	sequence1:3316724..3316993(+)	partial			WP_013087269.1	GNAT family N-acetyltransferase	100.0	55.3	100.0
MGA_3190	LOCUS_31700	sequence1:3317147..3317872(-)	frameshift		3317904	WP_009310015.1	IS3-like element ISKpn38 family transposase	100.0	47.3	98.3
MGA_3191	LOCUS_31710	sequence1:3317878..3318174(-)	frameshift		3317904	WP_009310015.1	IS3-like element ISKpn38 family transposase	90.8	17.5	95.5
MGA_3197	LOCUS_31770	sequence1:3324126..3324407(-)	partial			WP_113932710.1	helix-turn-helix domain-containing protein	53.8	75.8	68.0
MGA_3199	LOCUS_31790	sequence1:3324929..3325192(+)	partial			WP_011105580.1	transposase	82.8	65.5	62.5
MGA_3305	LOCUS_32850	sequence1:3425174..3425368(-)	partial			WP_013095951.1	hypothetical protein	68.8	37.3	88.6
MGA_3321	LOCUS_33010	sequence1:3433830..3434507(+)	frameshift		3433590	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_3325	LOCUS_33050	sequence1:3435443..3435802(+)	partial			WP_010905952.1	hypothetical protein	33.6	34.5	53.7
MGA_3369	LOCUS_33490	sequence1:3464449..3465432(-)	partial			WP_013098028.1	DUF6418 domain-containing protein	100.0	73.3	100.0
MGA_3427	LOCUS_34070	sequence1:3537034..3537231(+)	partial			WP_143347346.1	inovirus-type Gp2 protein	100.0	27.1	95.4
MGA_3428	LOCUS_34080	sequence1:3537293..3537688(+)	frameshift		3537640	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_3431	LOCUS_34110	sequence1:3540599..3541429(-)	frameshift		3541461	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_3435	LOCUS_34150	sequence1:3542645..3542869(-)	partial			WP_047369517.1	recombinase family protein	89.2	10.3	100.0
MGA_3490	LOCUS_34700	sequence1:3603442..3604023(-)	partial			WP_038420170.1	LacI family DNA-binding transcriptional regulator	100.0	57.6	99.5
MGA_3492	LOCUS_34720	sequence1:3607259..3608089(-)	frameshift		3608121	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_3518	LOCUS_34980	sequence1:3639918..3640778(+)	partial			WP_013097891.1	EAL domain-containing protein	100.0	57.8	100.0
MGA_3555	LOCUS_35350	sequence1:3684456..3685253(+)	partial			WP_013097857.1	DUF6418 domain-containing protein	100.0	60.2	99.6
MGA_3621	LOCUS_36010	sequence1:3753508..3753717(+)	internal_stop_codon	3753715..3753717(+)		WP_038420038.1	flagellar biosynthetic protein FliR	100.0	26.6	87.0
MGA_3622	LOCUS_36020	sequence1:3753727..3754287(+)	internal_stop_codon	3753715..3753717(+)		WP_038420038.1	flagellar biosynthetic protein FliR	100.0	71.8	96.8
MGA_3693	LOCUS_36730	sequence1:3821665..3821916(-)	partial			WP_014070847.1	site-specific integrase	98.8	19.1	100.0
MGA_3695	LOCUS_36750	sequence1:3822520..3823197(+)	frameshift		3822280	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_3705	LOCUS_36850	sequence1:3826805..3827191(+)	partial			WP_015039430.1	HNH endonuclease	87.5	68.3	44.3
MGA_3707	LOCUS_36870	sequence1:3828022..3828417(-)	frameshift		3828069	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_3710	LOCUS_36900	sequence1:3829833..3830084(+)	frameshift		3830169,3830075	WP_013097723.1	lysis protein	92.8	50.0	100.0
MGA_3711	LOCUS_36910	sequence1:3830065..3830265(+)	frameshift		3830169,3830075	WP_013097723.1	lysis protein	51.5	22.1	100.0
MGA_3713	LOCUS_36930	sequence1:3831254..3831517(+)	partial			WP_013096458.1	hypothetical protein	100.0	58.4	63.2
MGA_3729	LOCUS_37090	sequence1:3841182..3841550(+)	partial			WP_015705871.1	hypothetical protein	68.9	57.5	58.3
MGA_3740	LOCUS_37200	sequence1:3852223..3853134(-)	partial			WP_013095999.1	hypothetical protein	100.0	51.4	96.7
MGA_3754	LOCUS_37340	sequence1:3867885..3868436(+)	frameshift		3868412,3868391	WP_013096013.1	WbqC family protein	92.3	72.8	100.0
MGA_3765	LOCUS_37450	sequence1:3877004..3877525(+)	partial			WP_013096024.1	transcriptional regulator SdiA	100.0	72.1	95.4
MGA_3791	LOCUS_37710	sequence1:3903607..3903966(-)	internal_stop_codon	3904027..3904029(-)		WP_038419943.1	universal stress protein UspC	100.0	83.8	94.1
MGA_3843	LOCUS_38230	sequence1:3960156..3960461(-)	partial			WP_013096101.1	carbon-nitrogen hydrolase family protein	100.0	46.8	99.0
MGA_3849	LOCUS_38290	sequence1:3964306..3964761(-)	frameshift		3964814	WP_144136388.1	benzoate transporter	99.3	52.8	80.0
MGA_3850	LOCUS_38300	sequence1:3964791..3965153(-)	frameshift		3964817	WP_101762936.1	benzoate transporter	99.2	42.2	82.4
MGA_3937	LOCUS_39170	sequence1:4064356..4064805(+)	partial			WP_013096195.1	immunity protein Tsi6 family protein	93.3	49.8	31.8
MGA_3942	LOCUS_39220	sequence1:4069440..4069883(+)	partial			WP_155031336.1	ADP-ribosylglycohydrolase family protein	92.5	37.1	75.0
MGA_3944	LOCUS_39240	sequence1:4070995..4071606(+)	partial			WP_155031336.1	ADP-ribosylglycohydrolase family protein	99.5	55.0	81.2
MGA_3970	LOCUS_39500	sequence1:4090962..4091171(+)	internal_stop_codon	4090851..4090853(+)		WP_013096205.1	RHS repeat-associated core domain-containing protein	78.3	3.7	81.5
MGA_4015	LOCUS_39950	sequence1:4139851..4140210(-)	partial			WP_029883447.1	YchJ family protein	87.4	68.4	100.0
MGA_4052	LOCUS_40320	sequence1:4172971..4173213(+)	frameshift		4173195	WP_010951191.1	hypothetical protein	97.5	20.7	53.8
MGA_4053	LOCUS_40330	sequence1:4173276..4173941(+)	partial			WP_084833292.1	helix-turn-helix domain-containing protein	99.5	68.9	55.9
MGA_4064	LOCUS_40440	sequence1:4179546..4180040(+)	partial			WP_226571285.1	hypothetical protein	95.7	57.1	82.2
MGA_4079	LOCUS_40590	sequence1:4190489..4191076(+)	partial			WP_081097245.1	Clp protease ClpP	64.6	18.7	96.8
MGA_4092	LOCUS_40720	sequence1:4201343..4201738(-)	frameshift		4201390	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_4116	LOCUS_40960	sequence1:4221676..4221945(+)	partial			WP_026094360.1	recombinase family protein	82.0	39.5	97.3
MGA_4150	LOCUS_41300	sequence1:4261073..4261252(-)	partial			WP_038419673.1	hypothetical protein	100.0	46.1	79.7
MGA_4153	LOCUS_41330	sequence1:4263556..4263927(-)	partial			WP_038419670.1	ATP-grasp fold amidoligase family protein	100.0	40.5	92.7
MGA_4155	LOCUS_41350	sequence1:4265003..4265536(-)	partial			WP_038419670.1	ATP-grasp fold amidoligase family protein	98.3	57.2	99.4
MGA_4197	LOCUS_41770	sequence1:4312912..4313514(+)	internal_stop_codon	4313512..4313514(+)		WP_015705822.1	type VI secretion system Vgr family protein	100.0	25.3	71.0
MGA_4198	LOCUS_41780	sequence1:4313548..4315704(+)	internal_stop_codon	4313512..4313514(+)		WP_002210012.1	type VI secretion system tip protein VgrG	78.7	71.9	71.5
MGA_4207	LOCUS_41870	sequence1:4325548..4325739(+)	partial			WP_051905109.1	PAAR domain-containing protein	92.1	14.9	79.3
MGA_4227	LOCUS_42070	sequence1:4346202..4346390(+)	partial			WP_052123616.1	DUF1294 domain-containing protein	100.0	50.0	93.8
MGA_4230	LOCUS_42100	sequence1:4347302..4347604(+)	partial			WP_038419542.1	GFA family protein	100.0	70.9	97.0
MGA_4253	LOCUS_42330	sequence1:4374072..4374320(+)	internal_stop_codon	4374318..4374320(+)		WP_015705554.1	ABC transporter substrate-binding protein	100.0	15.4	70.7
MGA_4254	LOCUS_42340	sequence1:4374432..4375670(+)	internal_stop_codon	4374318..4374320(+)		WP_015705554.1	ABC transporter substrate-binding protein	100.0	77.4	85.7
MGA_4284	LOCUS_42640	sequence1:4405014..4405199(+)	partial			WP_000511287.1	protein YidI	96.7	39.6	45.8
MGA_4320	LOCUS_42990	sequence1:4445305..4446396(+)	frameshift		4446270	WP_013096959.1	diguanylate phosphodiesterase	87.1	78.1	39.7
MGA_4321	LOCUS_43000	sequence1:4446396..4446566(+)	frameshift		4446270	WP_013096959.1	diguanylate phosphodiesterase	92.9	12.8	57.7
MGA_4455	LOCUS_44340	sequence1:4583042..4583842(-)	internal_stop_codon	4583957..4583959(-)		WP_108902063.1	RelA/SpoT domain-containing protein	99.6	71.8	57.0
MGA_4456	LOCUS_44350	sequence1:4583957..4584136(-)	internal_stop_codon	4583957..4583959(-)		WP_108902063.1	RelA/SpoT domain-containing protein	100.0	16.0	57.6
MGA_4457	LOCUS_44360	sequence1:4584479..4584874(+)	frameshift		4584826	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_4467	LOCUS_44460	sequence1:4592579..4593139(+)	partial			WP_013096689.1	hypothetical protein	100.0	63.3	96.8
MGA_4470	LOCUS_44490	sequence1:4596604..4604298(-)	frameshift,internal_stop_codon	4600422..4600424(-),4600420..4600422(-),4604377..4604379(-)	4599168,4601922,4599170,4599234,4599172,4599182,4600404,4600416,4601894,4600358,4599207,4599465,4599209,4600491,4599404,4600497,4600374,4600376,4601919	WP_000052484.1	Ig-like domain-containing protein	99.9	37.3	59.4
MGA_4471	LOCUS_44500	sequence1:4604377..4614609(-)	frameshift,internal_stop_codon	4604376..4604378(-),4613898..4613900(-),4604377..4604379(-)	4613861	WP_000052484.1	Ig-like domain-containing protein	95.0	46.8	58.6
MGA_4507	LOCUS_44860	sequence1:4648224..4648382(+)	partial			WP_014831802.1	TetR/AcrR family transcriptional regulator	88.5	22.5	100.0
MGA_4524	LOCUS_45030	sequence1:4665196..4665474(+)	partial			WP_106663664.1	SDR family oxidoreductase	93.5	36.1	49.4
MGA_4525	LOCUS_45040	sequence1:4665484..4666314(-)	frameshift		4666346	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_4527	LOCUS_45060	sequence1:4666709..4667137(+)	partial			WP_003810494.1	SDR family oxidoreductase	99.3	59.2	70.2
MGA_4529	LOCUS_45080	sequence1:4667874..4668551(+)	frameshift		4667634	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_4531	LOCUS_45100	sequence1:4669009..4669821(+)	frameshift		4668913	WP_089600859.1	IS3 family transposase	100.0	70.7	98.9
MGA_4567	LOCUS_45460	sequence1:4708818..4709063(-)	partial			WP_015366755.1	universal stress protein	100.0	56.6	61.7
MGA_4569	LOCUS_45480	sequence1:4710190..4710315(-)	partial			WP_015366755.1	universal stress protein	97.6	28.0	72.5
MGA_4597	LOCUS_45760	sequence1:4743642..4743914(-)	partial			WP_004959820.1	DUF4225 domain-containing protein	64.4	21.6	82.8
MGA_4608	LOCUS_45870	sequence1:4753054..4754265(-)	partial			WP_013096824.1	S-type pyocin domain-containing protein	100.0	71.3	93.5
MGA_4644	LOCUS_46230	sequence1:4792586..4793209(-)	frameshift		4792609	WP_013096860.1	LysR family transcriptional regulator	96.6	66.0	100.0
MGA_4668	LOCUS_46470	sequence1:4820119..4821285(+)	partial			WP_015705244.1	maltose/glucose-specific PTS transporter subunit IIBC	97.2	71.1	86.5
MGA_4670	LOCUS_46490	sequence1:4823224..4823901(-)	frameshift		4824140	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_4673	LOCUS_46520	sequence1:4825180..4825677(+)	partial			WP_200831647.1	lysozyme inhibitor LprI family protein	100.0	65.2	100.0
MGA_4677	LOCUS_46560	sequence1:4827597..4828034(-)	partial			WP_000590429.1	cytochrome b/b6 domain-containing protein	86.9	60.6	58.7
MGA_4679	LOCUS_46580	sequence1:4828894..4829289(-)	frameshift		4828941	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_4680	LOCUS_46590	sequence1:4829338..4829529(-)	partial			WP_000590429.1	cytochrome b/b6 domain-containing protein	93.7	29.1	54.2
MGA_4684	LOCUS_46630	sequence1:4833118..4833948(-)	frameshift		4834004	WP_013095381.1	IS3 family transposase	100.0	74.0	95.7
MGA_4687	LOCUS_46660	sequence1:4836117..4836587(+)	partial			WP_015705244.1	maltose/glucose-specific PTS transporter subunit IIBC	99.4	29.2	86.5
MGA_4709	LOCUS_46880	sequence1:4857173..4857961(+)	frameshift		4857949	WP_143830281.1	GGDEF domain-containing protein	93.5	54.6	42.9
MGA_4710	LOCUS_46890	sequence1:4857958..4858533(+)	frameshift		4857949	WP_143830281.1	GGDEF domain-containing protein	98.4	40.5	63.8
MGA_4768	LOCUS_47470	sequence1:4915129..4915680(-)	frameshift		4915143	WP_013096968.1	fimbria/pilus periplasmic chaperone	97.8	79.6	95.5
MGA_4770	LOCUS_47490	sequence1:4916759..4917283(+)	frameshift		4916753	WP_013096970.1	helix-turn-helix domain-containing protein	100.0	79.5	99.4
MGA_4818	LOCUS_47970	sequence1:4968644..4968793(-)	frameshift		4968810	WP_013097018.1	chitin disaccharide deacetylase	100.0	19.7	100.0
MGA_4819	LOCUS_47980	sequence1:4968793..4969392(-)	frameshift		4968810	WP_013097018.1	chitin disaccharide deacetylase	97.5	77.9	100.0
MGA_4861	LOCUS_48400	sequence1:5008396..5009226(+)	frameshift		5008363	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_4863	LOCUS_48420	sequence1:5010014..5010166(-)	partial			WP_013097058.1	hypothetical protein	100.0	64.9	100.0
MGA_4874	LOCUS_48530	sequence1:5021604..5021762(-)	partial			WP_038419130.1	DUF333 domain-containing protein	100.0	61.9	100.0
MGA_4893	LOCUS_48720	sequence1:5040266..5040598(-)	partial			WP_038419118.1	transposase	100.0	67.5	97.3
MGA_4972	LOCUS_49510	sequence1:5116718..5117548(+)	frameshift		5116685	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_4973	LOCUS_49520	sequence1:5117558..5118019(-)	partial			WP_080500353.1	recombinase family protein	96.1	24.1	94.6
MGA_5041	LOCUS_50200	sequence1:5183848..5184258(+)	internal_stop_codon	5184256..5184258(+)		WP_015705415.1	oxamate amidohydrolase	99.3	25.6	73.3
MGA_5043	LOCUS_50220	sequence1:5184490..5185431(+)	internal_stop_codon	5184256..5184258(+)		WP_015705415.1	oxamate amidohydrolase	100.0	59.4	81.5
MGA_5094	LOCUS_50730	sequence1:5237098..5237928(+)	frameshift		5237065	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_5095	LOCUS_50740	sequence1:5237921..5238466(-)	partial			WP_000061506.1	helix-turn-helix domain-containing protein	93.9	62.9	71.3
MGA_5096	LOCUS_50750	sequence1:5238634..5239446(-)	frameshift		5239541	WP_089600859.1	IS3 family transposase	100.0	70.7	98.9
MGA_5162	LOCUS_51410	sequence1:5315436..5316248(-)	frameshift		5316343	WP_089600859.1	IS3 family transposase	100.0	70.7	98.9
MGA_5171	LOCUS_51490	sequence2:5706..6536(-)	frameshift		6568	WP_087451024.1	IS3-like element ISSen4 family transposase	100.0	74.0	96.0
MGA_5175	LOCUS_51530	sequence2:7556..8224(-)	partial			WP_205617032.1	integrase core domain-containing protein	81.5	49.5	42.5
MGA_5176	LOCUS_51540	sequence2:8503..9180(-)	frameshift		9419	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	57.8	100.0
MGA_5178	LOCUS_51560	sequence2:9741..10025(-)	partial			WP_150408539.1	helix-turn-helix domain-containing protein	90.4	37.8	41.4
MGA_5186	LOCUS_51640	sequence2:14153..14446(+)	partial			WP_013087186.1	hypothetical protein	100.0	66.9	100.0
MGA_5188	LOCUS_51660	sequence2:15313..15651(-)	partial			WP_050863361.1	lytic transglycosylase domain-containing protein	100.0	62.6	97.3
MGA_5222	LOCUS_52000	sequence2:41504..41935(+)	partial			WP_032641144.1	conjugal transfer complement resistance protein TraT	99.3	58.4	97.2
MGA_5232	LOCUS_52100	sequence2:56522..57175(+)	frameshift		56258	WP_152858326.1	IS3 family transposase	100.0	55.4	98.6
MGA_5277	LOCUS_52550	sequence2:93631..95682(+)	partial			WP_003100881.1	Tn3-like element ISPa38 family transposase	99.3	74.2	90.2
MGA_5286	LOCUS_52640	sequence2:102858..103331(-)	partial			WP_011236150.1	IS200/IS605-like element ISAzo20 family transposase	63.7	68.8	71.3
MGA_5287	LOCUS_52650	sequence2:103423..103992(+)	frameshift		103403	WP_011069273.1	IS3 family transposase	99.5	84.7	89.4
MGA_5288	LOCUS_52660	sequence2:106199..106498(+)	partial			WP_015703357.1	type 1 fimbria switch DNA invertase FimE	65.7	32.8	58.5
MGA_5291	LOCUS_52690	sequence2:108346..109281(-)	partial			WP_002213256.1	Tn3 family transposase	95.2	38.4	96.6
MGA_5293	LOCUS_52710	sequence2:110352..110951(+)	partial			WP_114191663.1	VasL domain-containing protein	96.5	42.4	74.5
MGA_5294	LOCUS_52720	sequence2:111008..111403(+)	frameshift		111355	WP_088499556.1	IS3 family transposase	90.8	29.6	92.4
MGA_5296	LOCUS_52740	sequence2:112480..113049(+)	partial			WP_054180865.1	VasL domain-containing protein	96.8	40.4	67.8
MGA_5313	LOCUS_52910	sequence2:126110..127147(-)	partial			WP_001211179.1	copper resistance membrane spanning protein PcoS	100.0	74.0	99.7
MGA_5315	LOCUS_52930	sequence2:128262..128576(-)	partial			WP_001211179.1	copper resistance membrane spanning protein PcoS	97.1	21.7	100.0
MGA_5322	LOCUS_53000	sequence2:134348..134824(+)	partial			WP_163181471.1	peptidoglycan DD-metalloendopeptidase family protein	97.5	64.5	82.9
MGA_5329	LOCUS_53070	sequence2:138737..140542(-)	partial			WP_129244003.1	Ag(+)-translocating P-type ATPase SilP	100.0	73.0	99.5
MGA_5339	LOCUS_53170	sequence2:151459..151692(+)	partial			WP_013087117.1	DUF305 domain-containing protein	100.0	63.1	100.0
MGA_5350	LOCUS_53280	sequence2:158579..159232(-)	frameshift		159495	WP_152858326.1	IS3 family transposase	100.0	55.4	98.6
MGA_5352	LOCUS_53300	sequence2:159816..160022(+)	partial			WP_116164460.1	korC	72.1	51.0	85.7
MGA_5380	LOCUS_53580	sequence2:181448..181957(+)	frameshift		181939	WP_100249962.1	IS3 family transposase	98.8	36.6	95.8
MGA_5381	LOCUS_53590	sequence2:182014..182817(+)	frameshift		181939	WP_100249962.1	IS3 family transposase	99.6	58.3	92.9
MGA_5401	LOCUS_53790	sequence2:198531..199064(-)	frameshift		199265,199097,199175	WP_004196325.1	hypothetical protein	100.0	70.2	100.0