{ "type": "genome", "identifier": "GCF_013377785.1", "organism": "Ruegeria haliotis", "title": "Ruegeria haliotis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Insititute of Oceanology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013377785.1", "bioproject": "PRJNA224116", "biosample": "SAMN15345213", "wgs_master": "JABXWT000000000.1", "refseq_category": "reference genome", "taxid": "2747601", "species_taxid": "2747601", "organism_name": "Ruegeria haliotis", "infraspecific_name": "strain=B1Z28", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/30", "asm_name": "ASM1337778v1", "asm_submitter": "Insititute of Oceanology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_013377785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/377/785/GCF_013377785.1_ASM1337778v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4811426", "genome_size_ungapped": "4811376", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "148", "contig_count": "148", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013377785.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4704", "protein_coding_gene_count": "4571", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-30", "dateModified": "2020-06-30", "datePublished": "2020-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruegeria haliotis" ], "sample_taxid": [ "2747601" ], "sample_host_organism": [ "Haliotis rubra" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.372 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4811426", "Number of Sequences": "148", "Longest Sequences (bp)": "998355", "N50 (bp)": "175688", "Gap Ratio (%)": "0.001039", "GCcontent (%)": "56.6", "Number of CDSs": "4671", "Average Protein Length": "304.1", "Coding Ratio (%)": "88.6", "Number of rRNAs": "4", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruegeria haliotis", "strain": "strain=B1Z28", "accession": "GCA_013377785.1", "taxid": 2747601, "species_taxid": 2747601, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1557, "total_fragments": 1558, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ruegeria atlantica", "strain": "strain=CECT 4292", "accession": "GCA_001458195.1", "taxid": 81569, "species_taxid": 81569, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9365, "matched_fragments": 751, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria meonggei", "strain": "strain=CECT 8411", "accession": "GCA_900172215.1", "taxid": 1446476, "species_taxid": 1446476, "relation_to_type": "type", "validated": true, "ani": 80.8755, "matched_fragments": 803, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria halocynthiae", "strain": "strain=DSM 27839", "accession": "GCA_900106805.1", "taxid": 985054, "species_taxid": 985054, "relation_to_type": "type", "validated": true, "ani": 80.8345, "matched_fragments": 731, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria denitrificans", "strain": "strain=CECT 5091", "accession": "GCA_001458295.1", "taxid": 1715692, "species_taxid": 1715692, "relation_to_type": "type", "validated": true, "ani": 80.8088, "matched_fragments": 777, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 80.5933, "matched_fragments": 713, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria faecimaris", "strain": "strain=DSM 28009", "accession": "GCA_900182615.1", "taxid": 686389, "species_taxid": 686389, "relation_to_type": "type", "validated": true, "ani": 80.4939, "matched_fragments": 708, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=DSM 29317", "accession": "GCA_003664205.1", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3774, "matched_fragments": 668, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=TW15", "accession": "GCA_000192475.2", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 80.331, "matched_fragments": 670, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 79.2645, "matched_fragments": 584, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria litorea", "strain": "strain=CECT 7639", "accession": "GCA_900172225.1", "taxid": 1280831, "species_taxid": 1280831, "relation_to_type": "type", "validated": true, "ani": 78.6144, "matched_fragments": 496, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquimarina", "strain": "strain=DSM 24565", "accession": "GCA_000473165.1", "taxid": 476529, "species_taxid": 476529, "relation_to_type": "type", "validated": true, "ani": 78.2833, "matched_fragments": 400, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 77.532, "matched_fragments": 300, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", 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