{ "type": "genome", "identifier": "GCF_013385305.1", "organism": "Pseudomonas agarici", "title": "Pseudomonas agarici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wageningen University & Research", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013385305.1", "bioproject": "PRJNA224116", "biosample": "SAMN14599809", "wgs_master": "JACAQG000000000.1", "refseq_category": "na", "taxid": "46677", "species_taxid": "46677", "organism_name": "Pseudomonas agarici", "infraspecific_name": "strain=IPO3740", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/02", "asm_name": "ASM1338530v1", "asm_submitter": "Wageningen University & Research", "gbrs_paired_asm": "GCA_013385305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/385/305/GCF_013385305.1_ASM1338530v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5496474", "genome_size_ungapped": "5493167", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013385305.1-RS_2024_08_11", "annotation_date": "2024-08-11", "total_gene_count": "5005", "protein_coding_gene_count": "4782", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-02", "dateModified": "2020-07-02", "datePublished": "2020-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas agarici" ], "sample_taxid": [ "46677" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.558 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5496474", "Number of Sequences": "111", "Longest Sequences (bp)": "349993", "N50 (bp)": "152638", "Gap Ratio (%)": "0.060275", "GCcontent (%)": "59.0", "Number of CDSs": "4857", "Average Protein Length": "324.5", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas agarici", "strain": "strain=IPO3740", "accession": "GCA_013385305.1", "taxid": 46677, "species_taxid": 46677, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1782, "total_fragments": 1785, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas agarici", "strain": "strain=LMG 2112", "accession": "GCA_900109755.1", "taxid": 46677, "species_taxid": 46677, "relation_to_type": "type", "validated": true, "ani": 99.9842, "matched_fragments": 1773, "total_fragments": 1785, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas agarici", "strain": "strain=NCPPB 2289", "accession": "GCA_000280785.1", "taxid": 46677, "species_taxid": 46677, "relation_to_type": "type", "validated": true, "ani": 99.9199, "matched_fragments": 1764, "total_fragments": 1785, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas fuscovaginae", "strain": "strain=LMG 2158", "accession": "GCA_900108595.1", "taxid": 50340, "species_taxid": 50340, "relation_to_type": "suspected-type", "validated": true, "ani": 84.944, "matched_fragments": 1182, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas batumici", "strain": "strain=UCM B-321", "accession": "GCA_000820515.1", "taxid": 226910, "species_taxid": 226910, "relation_to_type": "type", "validated": true, "ani": 84.8913, "matched_fragments": 1105, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=DSM 6698", "accession": "GCA_003851905.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 83.249, "matched_fragments": 1043, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": true, "ani": 82.7567, "matched_fragments": 992, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kribbensis", "strain": "strain=46-2", 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2815720, "relation_to_type": "type", "validated": true, "ani": 81.7752, "matched_fragments": 934, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bharatica", "strain": "strain=CSV86", "accession": "GCA_000319305.2", "taxid": 2692112, "species_taxid": 2692112, "relation_to_type": "type", "validated": true, "ani": 81.0739, "matched_fragments": 824, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas coleopterorum", "strain": "strain=LMG 28558", "accession": "GCA_900105555.1", "taxid": 1605838, "species_taxid": 1605838, "relation_to_type": "type", "validated": true, "ani": 80.7364, "matched_fragments": 677, "total_fragments": 1785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": 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