{
    "type": "genome",
    "identifier": "GCF_013387005.1",
    "organism": "Pseudomonas putida",
    "title": "Pseudomonas putida",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Wageningen University & Research",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013387005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14599810",
        "wgs_master": "JACAQQ000000000.1",
        "refseq_category": "na",
        "taxid": "303",
        "species_taxid": "303",
        "organism_name": "Pseudomonas putida",
        "infraspecific_name": "strain=IPO3752",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/02",
        "asm_name": "ASM1338700v1",
        "asm_submitter": "Wageningen University & Research",
        "gbrs_paired_asm": "GCA_013387005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/387/005/GCF_013387005.1_ASM1338700v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6086944",
        "genome_size_ungapped": "6083240",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "81",
        "contig_count": "81",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013387005.1-RS_2024_08_11",
        "annotation_date": "2024-08-11",
        "total_gene_count": "5554",
        "protein_coding_gene_count": "5402",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-02",
    "dateModified": "2020-07-02",
    "datePublished": "2020-07-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas putida"
        ],
        "sample_taxid": [
            "303"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.695 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6086944",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "448525",
        "N50 (bp)": "245563",
        "Gap Ratio (%)": "0.061082",
        "GCcontent (%)": "62.4",
        "Number of CDSs": "5422",
        "Average Protein Length": "330.4",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "70",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudomonas putida",
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                "accession": "GCA_013387005.1",
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                "species_taxid": 303,
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                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1989,
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                "status": "conclusive"
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            {
                "organism_name": "Pseudomonas putida",
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                "species_taxid": 303,
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                "validated": true,
                "ani": 99.9939,
                "matched_fragments": 1994,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas putida",
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                "validated": true,
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                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas putida",
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                "accession": "GCA_900455645.1",
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                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9883,
                "matched_fragments": 1989,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas monteilii",
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                "accession": "GCA_000621245.1",
                "taxid": 76759,
                "species_taxid": 76759,
                "relation_to_type": "type",
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                "matched_fragments": 1525,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas inefficax",
                "strain": "strain=JV551A3",
                "accession": "GCA_900277125.1",
                "taxid": 2078786,
                "species_taxid": 2078786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.0876,
                "matched_fragments": 1502,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
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                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1361,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
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                "accession": "GCA_021602585.1",
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                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1995,
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                "status": "below_threshold"
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            {
                "organism_name": "Pseudomonas capeferrum",
                "strain": "strain=WCS358",
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                "species_taxid": 1495066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7555,
                "matched_fragments": 1388,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas capeferrum",
                "strain": "strain=WCS358",
                "accession": "GCA_000731675.1",
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                "species_taxid": 1495066,
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                "ani": 87.6682,
                "matched_fragments": 1548,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas urethralis",
                "strain": "strain=BML-PP042",
                "accession": "GCA_021602465.1",
                "taxid": 2740517,
                "species_taxid": 2740517,
                "relation_to_type": "suspected-type",
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                "ani": 87.2361,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas parafulva",
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                "accession": "GCA_000425765.1",
                "taxid": 157782,
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                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 1255,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_000412675.1",
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            },
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "matched_fragments": 1504,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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            },
            {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}