{ "type": "genome", "identifier": "GCF_013387285.1", "organism": "Actinosynnema pretiosum subsp. auranticum", "title": "Actinosynnema pretiosum subsp. auranticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiaotong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013387285.1", "bioproject": "PRJNA224116", "biosample": "SAMN11584878", "wgs_master": "JABBHD000000000.1", "refseq_category": "na", "taxid": "42198", "species_taxid": "42197", "organism_name": "Actinosynnema pretiosum subsp. auranticum", "infraspecific_name": "strain=DSM 44131", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/02", "asm_name": "ASM1338728v1", "asm_submitter": "Shanghai Jiaotong University", "gbrs_paired_asm": "GCA_013387285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/387/285/GCF_013387285.1_ASM1338728v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8105537", "genome_size_ungapped": "8105537", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013387285.1-RS_2024_09_07", "annotation_date": "2024-09-07", "total_gene_count": "7049", "protein_coding_gene_count": "6881", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-02", "dateModified": "2020-07-02", "datePublished": "2020-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinosynnema pretiosum subsp. auranticum" ], "sample_taxid": [ "42198" ], "sample_host_organism": [], 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"total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix carnea", "strain": "strain=CGMCC 4.7097", "accession": "GCA_003014735.1", "taxid": 1280637, "species_taxid": 1280637, "relation_to_type": "type", "validated": true, "ani": 81.7651, "matched_fragments": 1491, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix texasensis", "strain": "strain=DSM 44231", "accession": "GCA_003752005.1", "taxid": 103734, "species_taxid": 103734, "relation_to_type": "type", "validated": true, "ani": 81.6818, "matched_fragments": 1593, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix espanaensis", "strain": "strain=type strain: DSM 44229", "accession": "GCA_000328705.1", "taxid": 103731, "species_taxid": 103731, "relation_to_type": "type", "validated": true, "ani": 81.4992, "matched_fragments": 1482, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix deserti", "strain": "strain=BMP B8144", "accession": "GCA_009769385.1", "taxid": 2593674, "species_taxid": 2593674, "relation_to_type": "type", "validated": true, "ani": 81.498, "matched_fragments": 1472, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix australiensis", "strain": "strain=DSM 43800", "accession": "GCA_003634935.1", "taxid": 2072, "species_taxid": 2072, "relation_to_type": "type", "validated": true, "ani": 81.4831, "matched_fragments": 1445, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix variisporea", "strain": "strain=DSM 43911", "accession": "GCA_003634995.1", "taxid": 543527, "species_taxid": 543527, "relation_to_type": "type", "validated": true, "ani": 81.3616, "matched_fragments": 1491, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" 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"strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 78.7296, "matched_fragments": 990, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", "accession": "GCA_024171925.1", "taxid": 103728, "species_taxid": 103728, "relation_to_type": "type", "validated": true, "ani": 78.5912, "matched_fragments": 976, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 78.1108, "matched_fragments": 970, "total_fragments": 2693, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 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