{ "type": "genome", "identifier": "GCF_013387465.1", "organism": "Hydrogenophaga aromaticivorans", "title": "Hydrogenophaga aromaticivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Szent Istvan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013387465.1", "bioproject": "PRJNA224116", "biosample": "SAMN12757153", "wgs_master": "VYGV00000000.1", "refseq_category": "reference genome", "taxid": "2610898", "species_taxid": "2610898", "organism_name": "Hydrogenophaga aromaticivorans", "infraspecific_name": "strain=D2P1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/02", "asm_name": "ASM1338746v1", "asm_submitter": "Szent Istvan University", "gbrs_paired_asm": "GCA_013387465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/387/465/GCF_013387465.1_ASM1338746v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5633231", "genome_size_ungapped": "5631890", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013387465.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5461", "protein_coding_gene_count": "5326", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-02", "dateModified": "2020-07-02", "datePublished": "2020-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Hydrogenophaga aromaticivorans" ], "sample_taxid": [ "2610898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary: Siklos" ], "sample_host_location_id": [], "data_size": "1.546 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5633231", "Number of Sequences": "28", "Longest Sequences (bp)": "1147958", "N50 (bp)": "427742", "Gap Ratio (%)": "0.023805", "GCcontent (%)": "65.5", "Number of CDSs": "5373", "Average Protein Length": "316.2", "Coding Ratio (%)": "90.5", "Number of rRNAs": "9", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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