{
    "type": "genome",
    "identifier": "GCF_013388255.1",
    "organism": "Methanolobus zinderi",
    "title": "Methanolobus zinderi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Chung Hsing University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013388255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15340093",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "536044",
        "species_taxid": "536044",
        "organism_name": "Methanolobus zinderi",
        "infraspecific_name": "strain=DSM 21339",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/04",
        "asm_name": "ASM1338825v1",
        "asm_submitter": "National Chung Hsing University",
        "gbrs_paired_asm": "GCA_013388255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/388/255/GCF_013388255.1_ASM1338825v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2704953",
        "genome_size_ungapped": "2704953",
        "gc_percent": "44.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013388255.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "2706",
        "protein_coding_gene_count": "2635",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-04",
    "dateModified": "2020-07-04",
    "datePublished": "2020-07-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanolobus zinderi"
        ],
        "sample_taxid": [
            "536044"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Wilcox coal seam, Monroe, LA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.768 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2704953",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2704953",
        "N50 (bp)": "2704953",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.1",
        "Number of CDSs": "2653",
        "Average Protein Length": "296.6",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Methanolobus zinderi",
                "strain": "strain=DSM 21339",
                "accession": "GCA_013388255.1",
                "taxid": 536044,
                "species_taxid": 536044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 900,
                "total_fragments": 901,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanolobus halotolerans",
                "strain": "strain=SY-01",
                "accession": "GCA_004745425.1",
                "taxid": 2052935,
                "species_taxid": 2052935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4472,
                "matched_fragments": 478,
                "total_fragments": 901,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanolobus vulcani",
                "strain": "strain=PL 12/M",
                "accession": "GCA_900100715.1",
                "taxid": 38026,
                "species_taxid": 38026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6922,
                "matched_fragments": 203,
                "total_fragments": 901,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanolobus tindarius",
                "strain": "strain=DSM 2278",
                "accession": "GCA_000504205.1",
                "taxid": 2221,
                "species_taxid": 2221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3467,
                "matched_fragments": 206,
                "total_fragments": 901,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanolobus profundi",
                "strain": "strain=Mob M",
                "accession": "GCA_900114835.1",
                "taxid": 487685,
                "species_taxid": 487685,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2252,
                "matched_fragments": 257,
                "total_fragments": 901,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanolobus psychrotolerans",
                "strain": "strain=YSF-03",
                "accession": "GCA_002243045.1",
                "taxid": 1874706,
                "species_taxid": 1874706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1174,
                "matched_fragments": 188,
                "total_fragments": 901,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013388255.1",
                "gtdb_species": "s__Methanolobus zinderi",
                "ani": 100.0,
                "matched_fragments": 900,
                "total_fragments": 901,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanolobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.85",
                "min_intra_species_ani": "96.85",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002508635.1",
                "gtdb_species": "s__Methanolobus sp002508635",
                "ani": 94.6174,
                "matched_fragments": 498,
                "total_fragments": 901,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanolobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004745425.1",
                "gtdb_species": "s__Methanolobus sp004745425",
                "ani": 80.464,
                "matched_fragments": 476,
                "total_fragments": 901,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanolobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016932675.1",
                "gtdb_species": "s__Methanolobus sp016932675",
                "ani": 79.5855,
                "matched_fragments": 346,
                "total_fragments": 901,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanolobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900114835.1",
                "gtdb_species": "s__Methanolobus profundi",
                "ani": 78.2052,
                "matched_fragments": 259,
                "total_fragments": 901,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanolobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016278365.1",
                "gtdb_species": "s__Methanolobus sp016278365",
                "ani": 77.4417,
                "matched_fragments": 235,
                "total_fragments": 901,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanolobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": 0.986,
        "growth_tmp": 39.5,
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        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanolobus",
        "zinderi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}