{ "type": "genome", "identifier": "GCF_013389455.1", "organism": "Flavobacterium inviolabile", "title": "Flavobacterium inviolabile", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jeonbuk National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013389455.1", "bioproject": "PRJNA224116", "biosample": "SAMN15364525", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2748320", "species_taxid": "2748320", "organism_name": "Flavobacterium inviolabile", "infraspecific_name": "strain=P2-65", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/05", "asm_name": "ASM1338945v1", "asm_submitter": "Jeonbuk National University", "gbrs_paired_asm": "GCA_013389455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/389/455/GCF_013389455.1_ASM1338945v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3913347", "genome_size_ungapped": "3913347", "gc_percent": "39.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013389455.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3546", "protein_coding_gene_count": "3454", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-05", "dateModified": "2020-07-05", "datePublished": "2020-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium inviolabile" ], "sample_taxid": [ "2748320" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.097 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3913347", "Number of Sequences": "1", "Longest Sequences (bp)": "3913347", "N50 (bp)": "3913347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.7", "Number of CDSs": "3448", "Average Protein Length": "338.0", "Coding Ratio (%)": "89.3", "Number of rRNAs": "15", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium inviolabile", "strain": "strain=P2-65", "accession": "GCA_013389455.1", "taxid": 2748320, "species_taxid": 2748320, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1301, "total_fragments": 1304, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium supellecticarium", "strain": "strain=CC-CTC003", "accession": "GCA_004801375.1", "taxid": 2565924, "species_taxid": 2565924, "relation_to_type": "type", "validated": true, "ani": 81.3135, "matched_fragments": 704, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=S13", "accession": "GCA_000498515.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 78.7255, "matched_fragments": 330, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=R2A-7", "accession": "GCA_000769815.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 78.6818, "matched_fragments": 351, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=R2A-7", "accession": "GCA_000498475.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 78.67, "matched_fragments": 348, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=CGMCC 1.7270", "accession": "GCA_007830385.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 78.6655, "matched_fragments": 343, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limnosediminis", "strain": "strain=JC2902", "accession": "GCA_000498535.1", "taxid": 1401027, "species_taxid": 1401027, "relation_to_type": "type", "validated": true, "ani": 78.6593, "matched_fragments": 331, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=CGMCC 1.3801", "accession": "GCA_900100625.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 78.6067, "matched_fragments": 327, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 78.5591, "matched_fragments": 166, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000498495.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 78.5244, "matched_fragments": 303, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": 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"mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_004801375.1", "gtdb_species": "s__Flavobacterium sp004801375", "ani": 81.3037, "matched_fragments": 705, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000498475.1", "gtdb_species": "s__Flavobacterium cauense", "ani": 78.6818, "matched_fragments": 347, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": 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"min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000498495.1", "gtdb_species": "s__Flavobacterium enshiense", "ani": 78.5184, "matched_fragments": 301, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000430025.1", "gtdb_species": "s__Flavobacterium suncheonense", "ani": 78.4863, "matched_fragments": 287, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": 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