{
    "type": "genome",
    "identifier": "GCF_013391695.1",
    "organism": "Thiomicrorhabdus cannonii",
    "title": "Thiomicrorhabdus cannonii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of South Florida",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013391695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15353724",
        "wgs_master": "JACBGH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2748011",
        "species_taxid": "2748011",
        "organism_name": "Thiomicrorhabdus cannonii",
        "infraspecific_name": "strain=HH3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/08",
        "asm_name": "ASM1339169v1",
        "asm_submitter": "University of South Florida",
        "gbrs_paired_asm": "GCA_013391695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/391/695/GCF_013391695.1_ASM1339169v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2493962",
        "genome_size_ungapped": "2493962",
        "gc_percent": "52.500000",
        "replicon_count": "0",
        "scaffold_count": "59",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013391695.1-RS_2024_08_07",
        "annotation_date": "2024-08-07",
        "total_gene_count": "2396",
        "protein_coding_gene_count": "2327",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-08",
    "dateModified": "2020-07-08",
    "datePublished": "2020-07-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiomicrorhabdus cannonii"
        ],
        "sample_taxid": [
            "2748011"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Florida"
        ],
        "sample_host_location_id": [],
        "data_size": "0.708 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.2,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2493962",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "660165",
        "N50 (bp)": "241802",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.4",
        "Number of CDSs": "2297",
        "Average Protein Length": "323.5",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Thiomicrorhabdus cannonii",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thiomicrorhabdus chilensis",
                "strain": "strain=DSM 12352",
                "accession": "GCA_000483485.1",
                "taxid": 63656,
                "species_taxid": 63656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0547,
                "matched_fragments": 265,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus sediminis",
                "strain": "strain=G1",
                "accession": "GCA_005885815.1",
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                "species_taxid": 2580412,
                "relation_to_type": "type",
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                "ani": 77.9098,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus immobilis",
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                "accession": "GCA_021654855.1",
                "taxid": 2791037,
                "species_taxid": 2791037,
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                "validated": true,
                "ani": 77.7647,
                "matched_fragments": 112,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus heinhorstiae",
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                "accession": "GCA_013391765.2",
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                "species_taxid": 2748010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5775,
                "matched_fragments": 175,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus xiamenensis",
                "strain": "strain=G2",
                "accession": "GCA_013282625.1",
                "taxid": 2739063,
                "species_taxid": 2739063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4813,
                "matched_fragments": 180,
                "total_fragments": 815,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.2,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_013391695.1",
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                "total_fragments": 815,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
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                "mean_intra_species_ani": "99.61",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_016936535.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
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                "mean_intra_species_ani": "N/A",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000478585.1",
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                "matched_fragments": 70,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_017571475.1",
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            {
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            {
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        ]
    },
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}