{ "type": "genome", "identifier": "GCF_013394595.1", "organism": "Winogradskyella forsetii", "title": "Winogradskyella forsetii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mediterranean Institute For Advanced Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013394595.1", "bioproject": "PRJNA224116", "biosample": "SAMN14839900", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2686077", "species_taxid": "2686077", "organism_name": "Winogradskyella forsetii", "infraspecific_name": "strain=HL857", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/08", "asm_name": "ASM1339459v1", "asm_submitter": "Mediterranean Institute For Advanced Studies", "gbrs_paired_asm": "GCA_013394595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/394/595/GCF_013394595.1_ASM1339459v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4512651", "genome_size_ungapped": "4512651", "gc_percent": "34.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013394595.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3912", "protein_coding_gene_count": "3843", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-08", "dateModified": "2020-07-08", "datePublished": "2020-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella forsetii" ], "sample_taxid": [ "2686077" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Helgoland Roads" ], "sample_host_location_id": [], "data_size": "1.260 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4512651", "Number of Sequences": "1", "Longest Sequences (bp)": "4512651", "N50 (bp)": "4512651", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.7", "Number of CDSs": "3871", "Average Protein Length": "342.8", "Coding Ratio (%)": "88.2", "Number of rRNAs": "6", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella forsetii", "strain": "strain=HL857", "accession": "GCA_013394595.1", "taxid": 2686077, "species_taxid": 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"matched_fragments": 630, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 79.4809, "matched_fragments": 658, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 79.454, "matched_fragments": 581, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 79.3688, "matched_fragments": 638, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 79.3578, "matched_fragments": 563, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 79.3203, "matched_fragments": 579, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.3936, "matched_fragments": 186, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.3638, "matched_fragments": 253, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.9856, "matched_fragments": 156, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas spongiae", "strain": "strain=HN-E44", "accession": "GCA_003095375.1", "taxid": 2174845, "species_taxid": 2174845, "relation_to_type": "type", "validated": true, "ani": 76.9358, "matched_fragments": 60, "total_fragments": 1504, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": 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