{
    "type": "genome",
    "identifier": "GCF_013401515.1",
    "organism": "Halorarum halophilum",
    "title": "Halorarum halophilum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013401515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15183765",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2743090",
        "species_taxid": "2743090",
        "organism_name": "Halorarum halophilum",
        "infraspecific_name": "strain=Gai3-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/11",
        "asm_name": "ASM1340151v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_013401515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/401/515/GCF_013401515.1_ASM1340151v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4277959",
        "genome_size_ungapped": "4277959",
        "gc_percent": "67.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013401515.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4356",
        "protein_coding_gene_count": "4237",
        "non_coding_gene_count": "73",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-11",
    "dateModified": "2020-07-11",
    "datePublished": "2020-07-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halorarum halophilum"
        ],
        "sample_taxid": [
            "2743090"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Tibet Autonomous Region"
        ],
        "sample_host_location_id": [],
        "data_size": "1.160 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4277959",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3678615",
        "N50 (bp)": "3678615",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.2",
        "Number of CDSs": "4302",
        "Average Protein Length": "280.4",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halobaculum halophilum",
                "strain": "strain=Gai3-2",
                "accession": "GCA_013401515.1",
                "taxid": 2743090,
                "species_taxid": 2743090,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halobaculum salinum",
                "strain": "strain=NJ-3-1",
                "accession": "GCA_013402875.1",
                "taxid": 2743089,
                "species_taxid": 2743089,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 899,
                "total_fragments": 1424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobaculum roseum",
                "strain": "strain=CGMCC 1.15501",
                "accession": "GCA_019880245.1",
                "taxid": 2175149,
                "species_taxid": 2175149,
                "relation_to_type": "type",
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                "ani": 81.2223,
                "matched_fragments": 685,
                "total_fragments": 1424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobaculum magnesiiphilum",
                "strain": "strain=NBRC 109044",
                "accession": "GCA_019823105.1",
                "taxid": 1017351,
                "species_taxid": 1017351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1525,
                "matched_fragments": 670,
                "total_fragments": 1424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobaculum saliterrae",
                "strain": "strain=WSA2",
                "accession": "GCA_009831625.1",
                "taxid": 2073113,
                "species_taxid": 2073113,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9498,
                "matched_fragments": 637,
                "total_fragments": 1424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobaculum rubrum",
                "strain": "strain=C46",
                "accession": "GCA_019880225.1",
                "taxid": 2872158,
                "species_taxid": 2872158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7488,
                "matched_fragments": 619,
                "total_fragments": 1424,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobaculum gomorrense",
                "strain": "strain=DSM 9297",
                "accession": "GCA_900129775.1",
                "taxid": 43928,
                "species_taxid": 43928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5581,
                "matched_fragments": 610,
                "total_fragments": 1424,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013401515.1",
                "gtdb_species": "s__Halobaculum sp013401515",
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                "matched_fragments": 1424,
                "total_fragments": 1424,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013402875.1",
                "gtdb_species": "s__Halobaculum sp013402875",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009831625.1",
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                "matched_fragments": 636,
                "total_fragments": 1424,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003020945.1",
                "gtdb_species": "s__Halobaculum sp003020945",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000495475.1",
                "gtdb_species": "s__Halobaculum tyrrellense",
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                "matched_fragments": 662,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129775.1",
                "gtdb_species": "s__Halobaculum gomorrense",
                "ani": 80.5872,
                "matched_fragments": 606,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
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        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Halorarum",
        "halophilum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}