{
    "type": "genome",
    "identifier": "GCF_013403245.1",
    "organism": "Sedimentibacter hydroxybenzoicus DSM 7310",
    "title": "Sedimentibacter hydroxybenzoicus DSM 7310",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biogas Institute of Ministry of Agriculture, China",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013403245.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15455642",
        "wgs_master": "JACBNQ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123245",
        "species_taxid": "29345",
        "organism_name": "Sedimentibacter hydroxybenzoicus DSM 7310",
        "infraspecific_name": "strain=DSM 7310",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/12",
        "asm_name": "ASM1340324v1",
        "asm_submitter": "Biogas Institute of Ministry of Agriculture, China",
        "gbrs_paired_asm": "GCA_013403245.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/403/245/GCF_013403245.1_ASM1340324v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3809287",
        "genome_size_ungapped": "3809287",
        "gc_percent": "35.500000",
        "replicon_count": "0",
        "scaffold_count": "71",
        "contig_count": "71",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013403245.1-RS_2024_12_16",
        "annotation_date": "2024-12-16",
        "total_gene_count": "3792",
        "protein_coding_gene_count": "3695",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-12",
    "dateModified": "2020-07-12",
    "datePublished": "2020-07-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sedimentibacter hydroxybenzoicus DSM 7310"
        ],
        "sample_taxid": [
            "1123245"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "1.069 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3809287",
        "Number of Sequences": "71",
        "Longest Sequences (bp)": "523993",
        "N50 (bp)": "125658",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.5",
        "Number of CDSs": "3736",
        "Average Protein Length": "300.3",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sedimentibacter hydroxybenzoicus",
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                "accession": "GCA_013403245.1",
                "taxid": 29345,
                "species_taxid": 29345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1237,
                "total_fragments": 1239,
                "ani_threshold": 95,
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            },
            {
                "organism_name": "Sedimentibacter saalensis",
                "strain": "strain=DSM 13558",
                "accession": "GCA_007830175.1",
                "taxid": 130788,
                "species_taxid": 130788,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6566,
                "matched_fragments": 239,
                "total_fragments": 1239,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sedimentibacter acidaminivorans",
                "strain": "strain=DSM 24004",
                "accession": "GCA_017873955.1",
                "taxid": 913099,
                "species_taxid": 913099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7648,
                "matched_fragments": 158,
                "total_fragments": 1239,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_013403245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
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                "gtdb_species": "s__Sedimentibacter sp002331025",
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                "matched_fragments": 940,
                "total_fragments": 1239,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002381185.1",
                "gtdb_species": "s__Sedimentibacter sp002381185",
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                "matched_fragments": 404,
                "total_fragments": 1239,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002340985.1",
                "gtdb_species": "s__Sedimentibacter sp002340985",
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                "matched_fragments": 270,
                "total_fragments": 1239,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_018436705.1",
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                "matched_fragments": 254,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_003497505.1",
                "gtdb_species": "s__Sedimentibacter sp003497505",
                "ani": 77.9009,
                "matched_fragments": 190,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002409285.1",
                "gtdb_species": "s__Sedimentibacter sp002409285",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_003457065.1",
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                "matched_fragments": 211,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
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            },
            {
                "accession": "GCF_007830175.1",
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                "matched_fragments": 242,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
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                "status": "-"
            },
            {
                "accession": "GCA_002422545.1",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_003483345.1",
                "gtdb_species": "s__Sedimentibacter sp003483345",
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                "matched_fragments": 127,
                "total_fragments": 1239,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
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                "status": "-"
            },
            {
                "accession": "GCA_012843025.1",
                "gtdb_species": "s__Sedimentibacter sp002385835",
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                "total_fragments": 1239,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Sedimentibacteraceae;g__Sedimentibacter",
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                "mean_intra_species_ani": "99.84",
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                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.568,
        "doubling_h": null,
        "growth_tmp": 36.5,
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        "genome_size": 3834552.0,
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        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Sedimentibacter",
        "hydroxybenzoicus",
        "DSM",
        "7310"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}