{ "type": "genome", "identifier": "GCF_013404085.1", "organism": "Winogradskyella helgolandensis", "title": "Winogradskyella helgolandensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mediterranean Institute For Advanced Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013404085.1", "bioproject": "PRJNA224116", "biosample": "SAMN14839905", "wgs_master": "JABFHO000000000.1", "refseq_category": "reference genome", "taxid": "2697010", "species_taxid": "2697010", "organism_name": "Winogradskyella helgolandensis", "infraspecific_name": "strain=Z963", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340408v1", "asm_submitter": "Mediterranean Institute For Advanced Studies", "gbrs_paired_asm": "GCA_013404085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/404/085/GCF_013404085.1_ASM1340408v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4598621", "genome_size_ungapped": "4598621", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013404085.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3963", "protein_coding_gene_count": "3891", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella helgolandensis" ], "sample_taxid": [ "2697010" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Helgoland Roads" ], "sample_host_location_id": [], "data_size": "1.276 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4598621", "Number of Sequences": "2", "Longest Sequences (bp)": "4356360", "N50 (bp)": "4356360", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.1", "Number of CDSs": "3917", "Average Protein Length": "350.3", "Coding Ratio (%)": "89.5", "Number of rRNAs": "9", "Number of tRNAs": "43", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, 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"type", "validated": true, "ani": 84.9731, "matched_fragments": 1032, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 83.5665, "matched_fragments": 961, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella marina", "strain": "strain=F6397", "accession": "GCA_015645385.1", "taxid": 2785530, "species_taxid": 2785530, "relation_to_type": "type", "validated": true, "ani": 83.3718, "matched_fragments": 967, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 82.8015, "matched_fragments": 928, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 81.6085, "matched_fragments": 867, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 79.9738, "matched_fragments": 675, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.8179, "matched_fragments": 271, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.4407, "matched_fragments": 205, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.3698, "matched_fragments": 184, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.2802, "matched_fragments": 198, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.1959, "matched_fragments": 179, "total_fragments": 1532, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013404085.1", "gtdb_species": "s__Winogradskyella helgolandensis", "ani": 100.0, "matched_fragments": 1530, "total_fragments": 1532, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Winogradskyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "98.14", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_018860545.1", "gtdb_species": "s__Winogradskyella 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