{ "type": "genome", "identifier": "GCF_013404595.1", "organism": "Jannaschia marina", "title": "Jannaschia marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenzhen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013404595.1", "bioproject": "PRJNA224116", "biosample": "SAMN15090020", "wgs_master": "JABVAX000000000.1", "refseq_category": "reference genome", "taxid": "2741674", "species_taxid": "2741674", "organism_name": "Jannaschia marina", "infraspecific_name": "strain=SHC163", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340459v1", "asm_submitter": "Shenzhen University", "gbrs_paired_asm": "GCA_013404595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/404/595/GCF_013404595.1_ASM1340459v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3830351", "genome_size_ungapped": "3830251", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013404595.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3919", "protein_coding_gene_count": "3827", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Jannaschia marina" ], "sample_taxid": [ "2741674" ], "sample_host_organism": [ "Peronia verruculata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shenzhen Dapeng" ], "sample_host_location_id": [], "data_size": "1.048 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3830351", "Number of Sequences": "34", "Longest Sequences (bp)": "718645", "N50 (bp)": "321094", "Gap Ratio (%)": "0.002611", "GCcontent (%)": "67.8", "Number of CDSs": "3880", "Average Protein Length": "299.4", "Coding Ratio (%)": "91.0", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jannaschia marina", "strain": "strain=SHC163", "accession": "GCA_013404595.1", "taxid": 2741674, "species_taxid": 2741674, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1256, "total_fragments": 1257, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jannaschia formosa", "strain": "strain=12N15", "accession": "GCA_003340555.1", "taxid": 2259592, "species_taxid": 2259592, "relation_to_type": "type", "validated": true, "ani": 80.3548, "matched_fragments": 710, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jannaschia rubra", "strain": "strain=DSM 16279", "accession": "GCA_900113265.1", "taxid": 282197, "species_taxid": 282197, "relation_to_type": "type", "validated": true, "ani": 79.9548, "matched_fragments": 644, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jannaschia rubra", "strain": "strain=CECT 5088", "accession": "GCA_001403735.1", "taxid": 282197, "species_taxid": 282197, "relation_to_type": "type", "validated": true, "ani": 79.9274, "matched_fragments": 640, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 78.1025, "matched_fragments": 369, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 78.0315, "matched_fragments": 373, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hasllibacter halocynthiae", "strain": "strain=DSM 29318", "accession": "GCA_003003095.1", "taxid": 595589, "species_taxid": 595589, "relation_to_type": "type", "validated": true, "ani": 77.9487, "matched_fragments": 376, "total_fragments": 1257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": 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