{
    "type": "genome",
    "identifier": "GCF_013407165.1",
    "organism": "Nitrosopumilus oxyclinae",
    "title": "Nitrosopumilus oxyclinae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Washington",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013407165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08535025",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1959104",
        "species_taxid": "1959104",
        "organism_name": "Nitrosopumilus oxyclinae",
        "infraspecific_name": "strain=HCE1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/13",
        "asm_name": "ASM1340716v1",
        "asm_submitter": "University of Washington",
        "gbrs_paired_asm": "GCA_013407165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/407/165/GCF_013407165.1_ASM1340716v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1585110",
        "genome_size_ungapped": "1585110",
        "gc_percent": "33.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013407165.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "1926",
        "protein_coding_gene_count": "1873",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-13",
    "dateModified": "2020-07-13",
    "datePublished": "2020-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosopumilus oxyclinae"
        ],
        "sample_taxid": [
            "1959104"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.432 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1585110",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1585110",
        "N50 (bp)": "1585110",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "33.1",
        "Number of CDSs": "1826",
        "Average Protein Length": "260.2",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
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                "status": "below_threshold"
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                "status": "below_threshold"
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            {
                "organism_name": "Nitrosopumilus zosterae",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_013407165.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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                "status": "-"
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            {
                "accession": "GCA_013203245.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000299395.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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}