{ "type": "genome", "identifier": "GCF_013407835.1", "organism": "Agromyces atrinae", "title": "Agromyces atrinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013407835.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878008", "wgs_master": "JACCBI000000000.1", "refseq_category": "reference genome", "taxid": "592376", "species_taxid": "592376", "organism_name": "Agromyces atrinae", "infraspecific_name": "strain=DSM 23870", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340783v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013407835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/407/835/GCF_013407835.1_ASM1340783v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3650999", "genome_size_ungapped": "3650999", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013407835.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "3409", "protein_coding_gene_count": "3347", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Agromyces atrinae" ], "sample_taxid": [ "592376" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], 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2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 80.6574, "matched_fragments": 602, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces ramosus", "strain": "strain=DSM 43045", "accession": "GCA_004216665.1", "taxid": 33879, "species_taxid": 33879, "relation_to_type": "type", "validated": true, "ani": 80.5945, "matched_fragments": 591, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 80.5539, "matched_fragments": 606, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces italicus", "strain": "strain=JCM 14320", "accession": "GCA_009749375.1", "taxid": 279572, "species_taxid": 279572, "relation_to_type": "type", 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