{ "type": "genome", "identifier": "GCF_013407855.1", "organism": "Actinopolymorpha rutila", "title": "Actinopolymorpha rutila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013407855.1", "bioproject": "PRJNA224116", "biosample": "SAMN12793265", "wgs_master": "JACBZH000000000.1", "refseq_category": "reference genome", "taxid": "446787", "species_taxid": "446787", "organism_name": "Actinopolymorpha rutila", "infraspecific_name": "strain=DSM 18448", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340785v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013407855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/407/855/GCF_013407855.1_ASM1340785v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6952820", "genome_size_ungapped": "6952820", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013407855.1-RS_2024_03_22", "annotation_date": "2024-03-22", "total_gene_count": "6294", "protein_coding_gene_count": "6184", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinopolymorpha rutila" ], "sample_taxid": [ "446787" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yunnan Province, south-west China" ], "sample_host_location_id": [], "data_size": "1.865 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6952820", "Number of Sequences": "1", "Longest Sequences (bp)": "6952820", "N50 (bp)": "6952820", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.5", "Number of CDSs": "6383", "Average Protein Length": "323.1", "Coding Ratio (%)": "89.0", "Number of rRNAs": "6", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinopolymorpha rutila", "strain": "strain=DSM 18448", "accession": "GCA_013407855.1", "taxid": 446787, "species_taxid": 446787, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 77.239, "matched_fragments": 384, "total_fragments": 2317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 77.2077, "matched_fragments": 517, "total_fragments": 2317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 76.8694, "matched_fragments": 455, "total_fragments": 2317, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella 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