{ "type": "genome", "identifier": "GCF_013407955.1", "organism": "Microlunatus parietis", "title": "Microlunatus parietis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013407955.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878279", "wgs_master": "JACCBU000000000.1", "refseq_category": "reference genome", "taxid": "682979", "species_taxid": "682979", "organism_name": "Microlunatus parietis", "infraspecific_name": "strain=DSM 22083", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340795v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013407955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/407/955/GCF_013407955.1_ASM1340795v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7240126", "genome_size_ungapped": "7240126", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013407955.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "7008", "protein_coding_gene_count": "6882", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Microlunatus parietis" ], "sample_taxid": [ "682979" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Berlin" ], "sample_host_location_id": [], "data_size": "1.932 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7240126", "Number of Sequences": "1", "Longest Sequences (bp)": "7240126", "N50 (bp)": "7240126", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "7024", "Average Protein Length": "313.8", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microlunatus parietis", "strain": "strain=DSM 22083", "accession": "GCA_013407955.1", "taxid": 682979, "species_taxid": 682979, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2413, "total_fragments": 2413, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microlunatus speluncae", "strain": "strain=SYSU K12189", "accession": "GCA_009299835.1", "taxid": 2594267, "species_taxid": 2594267, "relation_to_type": "type", "validated": true, "ani": 83.8471, "matched_fragments": 1605, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus panaciterrae", "strain": "strain=DSM 18662", "accession": "GCA_016907535.1", "taxid": 400768, "species_taxid": 400768, "relation_to_type": "type", "validated": true, "ani": 78.6306, "matched_fragments": 559, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus kandeliicorticis", "strain": "strain=DSM 100723", "accession": "GCA_014137855.1", "taxid": 1759536, "species_taxid": 1759536, "relation_to_type": "type", "validated": true, "ani": 78.6238, "matched_fragments": 675, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus endophyticus", "strain": "strain=CGMCC 4.7306", "accession": "GCA_014646195.1", "taxid": 1716077, "species_taxid": 1716077, "relation_to_type": "type", "validated": true, "ani": 78.3197, "matched_fragments": 527, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus elymi", "strain": "strain=KUDC0627", "accession": "GCA_007362775.1", "taxid": 2596828, "species_taxid": 2596828, "relation_to_type": "type", "validated": true, "ani": 78.2661, "matched_fragments": 663, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus phosphovorus", "strain": "strain=NM-1", "accession": "GCA_000270245.1", "taxid": 29405, "species_taxid": 29405, "relation_to_type": "type", "validated": true, "ani": 78.1702, "matched_fragments": 522, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus cholistanensis", "strain": "strain=F435", "accession": "GCA_009742705.1", "taxid": 2656650, "species_taxid": 2656650, "relation_to_type": "type", "validated": true, "ani": 77.7802, "matched_fragments": 551, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 77.6685, "matched_fragments": 546, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 77.1161, "matched_fragments": 605, "total_fragments": 2413, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicoccus phenolivorans", "strain": "strain=DSM 17626", 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