{
    "type": "genome",
    "identifier": "GCF_013408525.1",
    "organism": "Nocardioides aromaticivorans",
    "title": "Nocardioides aromaticivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013408525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05878204",
        "wgs_master": "JACBZM000000000.1",
        "refseq_category": "reference genome",
        "taxid": "200618",
        "species_taxid": "200618",
        "organism_name": "Nocardioides aromaticivorans",
        "infraspecific_name": "strain=DSM 15131",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/13",
        "asm_name": "ASM1340852v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_013408525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/408/525/GCF_013408525.1_ASM1340852v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5257158",
        "genome_size_ungapped": "5257158",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013408525.1-RS_2024_09_03",
        "annotation_date": "2024-09-03",
        "total_gene_count": "5088",
        "protein_coding_gene_count": "5008",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-13",
    "dateModified": "2020-07-13",
    "datePublished": "2020-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardioides aromaticivorans"
        ],
        "sample_taxid": [
            "200618"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Kanagawa"
        ],
        "sample_host_location_id": [],
        "data_size": "1.384 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5257158",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "5069211",
        "N50 (bp)": "5069211",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.9",
        "Number of CDSs": "5058",
        "Average Protein Length": "324.0",
        "Coding Ratio (%)": "93.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardioides aromaticivorans",
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                "accession": "GCA_013408525.1",
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                "species_taxid": 200618,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1750,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_013409625.1",
                "taxid": 349522,
                "species_taxid": 349522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4417,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 908359,
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                "ani": 85.2537,
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                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides nitrophenolicus",
                "strain": "strain=DSM 15529",
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                "taxid": 60489,
                "species_taxid": 60489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9879,
                "matched_fragments": 1186,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pimelobacter simplex",
                "strain": "strain=NBRC 12069",
                "accession": "GCA_006538965.1",
                "taxid": 2045,
                "species_taxid": 2045,
                "relation_to_type": "type",
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                "ani": 84.9451,
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                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pimelobacter simplex",
                "strain": "strain=ATCC 6946",
                "accession": "GCA_900114845.1",
                "taxid": 2045,
                "species_taxid": 2045,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9001,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides humi",
                "strain": "strain=DCY24",
                "accession": "GCA_006494775.1",
                "taxid": 449461,
                "species_taxid": 449461,
                "relation_to_type": "type",
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                "ani": 84.8841,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides albidus",
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                "accession": "GCA_006335005.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides carbamazepini",
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                "accession": "GCA_024614185.1",
                "taxid": 2854259,
                "species_taxid": 2854259,
                "relation_to_type": "type",
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                "ani": 84.4597,
                "matched_fragments": 1093,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Nocardioides humilatus",
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                "taxid": 2607660,
                "species_taxid": 2607660,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides sambongensis",
                "strain": "strain=KUDC 5002",
                "accession": "GCA_006494815.1",
                "taxid": 2589074,
                "species_taxid": 2589074,
                "relation_to_type": "type",
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                "ani": 81.2887,
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                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides lacusdianchii",
                "strain": "strain=JXJ CY 38",
                "accession": "GCA_020102855.1",
                "taxid": 2783664,
                "species_taxid": 2783664,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1819,
                "matched_fragments": 732,
                "total_fragments": 1751,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides donggukensis",
                "strain": "strain=MJB4",
                "accession": "GCA_014842875.1",
                "taxid": 2774019,
                "species_taxid": 2774019,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_013408525.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}