{ "type": "genome", "identifier": "GCF_013409065.1", "organism": "Spelaeicoccus albus", "title": "Spelaeicoccus albus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013409065.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878474", "wgs_master": "JACBZP000000000.1", "refseq_category": "reference genome", "taxid": "1280376", "species_taxid": "1280376", "organism_name": "Spelaeicoccus albus", "infraspecific_name": "strain=DSM 26341", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340906v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013409065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/409/065/GCF_013409065.1_ASM1340906v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4029871", "genome_size_ungapped": "4029871", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013409065.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3757", "protein_coding_gene_count": "3678", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Spelaeicoccus albus" ], "sample_taxid": [ "1280376" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.116 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4029871", "Number of Sequences": "1", "Longest Sequences (bp)": "4029871", "N50 (bp)": "4029871", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "3745", "Average Protein Length": "327.2", "Coding Ratio (%)": "91.2", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spelaeicoccus albus", "strain": "strain=DSM 26341", "accession": "GCA_013409065.1", "taxid": 1280376, "species_taxid": 1280376, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1342, "total_fragments": 1343, 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"strain=CCUG 46604", "accession": "GCA_013004595.1", "taxid": 199591, "species_taxid": 199591, "relation_to_type": "type", "validated": true, "ani": 76.7687, "matched_fragments": 139, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium casei", "strain": "strain=CIP 102111", "accession": "GCA_900169275.1", "taxid": 33889, "species_taxid": 33889, "relation_to_type": "type", "validated": true, "ani": 76.7343, "matched_fragments": 137, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania halotolerans", "strain": "strain=M4N3S171", "accession": "GCA_021049285.1", "taxid": 2897773, "species_taxid": 2897773, "relation_to_type": "type", "validated": true, "ani": 76.5961, "matched_fragments": 86, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus dokdonensis", "strain": "strain=DSM 22329", "accession": "GCA_900104525.1", "taxid": 443156, "species_taxid": 443156, "relation_to_type": "type", "validated": true, "ani": 76.5577, "matched_fragments": 118, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter californiensis", "strain": "strain=CFBP 8216", "accession": "GCA_003576155.1", "taxid": 1401995, "species_taxid": 1401995, "relation_to_type": "type", "validated": true, "ani": 76.5234, "matched_fragments": 100, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania albidiflava", "strain": "strain=DSM 18029", "accession": "GCA_000421225.1", "taxid": 366586, "species_taxid": 366586, "relation_to_type": "type", "validated": true, "ani": 76.4593, "matched_fragments": 114, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, 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76.1361, "matched_fragments": 121, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineosporia rhizophila", "strain": "strain=JCM 9960", "accession": "GCA_021277265.1", "taxid": 84633, "species_taxid": 84633, "relation_to_type": "type", "validated": true, "ani": 76.0652, "matched_fragments": 139, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 76.0556, "matched_fragments": 107, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 76.0297, "matched_fragments": 99, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=DSM 40057", "accession": "GCA_013004455.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 75.634, "matched_fragments": 143, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NRRL B-1220", "accession": "GCA_002154495.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 75.5933, "matched_fragments": 135, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NBRC 12748", "accession": "GCA_006539165.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 75.5854, "matched_fragments": 152, "total_fragments": 1343, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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