{ "type": "genome", "identifier": "GCF_013409225.1", "organism": "Nocardioides lianchengensis", "title": "Nocardioides lianchengensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013409225.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878355", "wgs_master": "JACCAD000000000.1", "refseq_category": "na", "taxid": "1045774", "species_taxid": "1045774", "organism_name": "Nocardioides lianchengensis", "infraspecific_name": "strain=CGMCC 4.6858", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340922v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013409225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/409/225/GCF_013409225.1_ASM1340922v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5298051", "genome_size_ungapped": "5298051", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013409225.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "5099", "protein_coding_gene_count": "5027", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides lianchengensis" ], "sample_taxid": [ "1045774" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.385 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5298051", "Number of Sequences": "2", "Longest Sequences (bp)": "4199615", "N50 (bp)": "4199615", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.6", "Number of CDSs": "5077", "Average Protein Length": "325.3", "Coding Ratio (%)": "93.5", "Number of rRNAs": "6", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1764, "total_fragments": 1765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 99.9935, "matched_fragments": 1740, "total_fragments": 1765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 84.5975, "matched_fragments": 1027, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 82.5039, "matched_fragments": 869, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 82.4725, "matched_fragments": 933, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 82.4122, "matched_fragments": 925, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 82.2394, "matched_fragments": 951, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 82.1113, "matched_fragments": 984, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 81.9302, "matched_fragments": 959, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.9063, "matched_fragments": 885, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_016907435.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.898, "matched_fragments": 893, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.8685, "matched_fragments": 897, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 81.5527, "matched_fragments": 911, "total_fragments": 1765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides plantarum", "strain": "strain=DSM 11054", "accession": "GCA_006346395.1", "taxid": 29299, 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