{ "type": "genome", "identifier": "GCF_013409595.1", "organism": "Leucobacter aridicollis", "title": "Leucobacter aridicollis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013409595.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878389", "wgs_master": "JACCBD000000000.1", "refseq_category": "reference genome", "taxid": "283878", "species_taxid": "283878", "organism_name": "Leucobacter aridicollis", "infraspecific_name": "strain=DSM 17380", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340959v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013409595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/409/595/GCF_013409595.1_ASM1340959v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3573416", "genome_size_ungapped": "3573416", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013409595.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3282", "protein_coding_gene_count": "3212", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter aridicollis" ], "sample_taxid": [ "283878" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.977 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3573416", "Number of Sequences": "1", "Longest Sequences (bp)": "3573416", "N50 (bp)": "3573416", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "3264", "Average Protein Length": "332.5", "Coding Ratio (%)": "91.1", "Number of rRNAs": "9", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter aridicollis", "strain": "strain=DSM 17380", "accession": "GCA_013409595.1", "taxid": 283878, "species_taxid": 283878, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1190, 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}, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 80.1224, "matched_fragments": 474, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 79.9974, "matched_fragments": 476, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 79.9188, "matched_fragments": 441, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter celer subsp. astrifaciens", "strain": "strain=CBX151", "accession": "GCA_001273835.1", "taxid": 1461260, "species_taxid": 668625, "relation_to_type": "type", "validated": true, "ani": 79.8374, "matched_fragments": 460, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 79.5898, "matched_fragments": 416, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter japonicus", "strain": "strain=CBX130", "accession": "GCA_001273855.1", "taxid": 1461259, "species_taxid": 1461259, "relation_to_type": "type", "validated": true, "ani": 79.4201, "matched_fragments": 371, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter musarum subsp. musarum", "strain": "strain=CBX152", "accession": "GCA_001273845.1", "taxid": 1461261, "species_taxid": 1930747, "relation_to_type": "type", "validated": true, "ani": 79.3413, "matched_fragments": 367, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 77.8163, "matched_fragments": 281, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chinensis", "strain": "strain=NC76-1", "accession": "GCA_019049105.1", "taxid": 2851010, "species_taxid": 2851010, "relation_to_type": "type", "validated": true, "ani": 77.808, "matched_fragments": 208, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 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