{
    "type": "genome",
    "identifier": "GCF_013409625.1",
    "organism": "Nocardioides kongjuensis",
    "title": "Nocardioides kongjuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013409625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05877833",
        "wgs_master": "JACCBF000000000.1",
        "refseq_category": "reference genome",
        "taxid": "349522",
        "species_taxid": "349522",
        "organism_name": "Nocardioides kongjuensis",
        "infraspecific_name": "strain=DSM 19082",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/13",
        "asm_name": "ASM1340962v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_013409625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/409/625/GCF_013409625.1_ASM1340962v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5673606",
        "genome_size_ungapped": "5673606",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013409625.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "5471",
        "protein_coding_gene_count": "5397",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-13",
    "dateModified": "2020-07-13",
    "datePublished": "2020-07-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardioides kongjuensis"
        ],
        "sample_taxid": [
            "349522"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.493 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5673606",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5673606",
        "N50 (bp)": "5673606",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.8",
        "Number of CDSs": "5459",
        "Average Protein Length": "324.5",
        "Coding Ratio (%)": "93.7",
        "Number of rRNAs": "9",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardioides kongjuensis",
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                "relation_to_type": "type",
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            },
            {
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                "species_taxid": 908359,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 60489,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides albidus",
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                "species_taxid": 1517589,
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                "matched_fragments": 1209,
                "total_fragments": 1891,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides humi",
                "strain": "strain=DCY24",
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                "taxid": 449461,
                "species_taxid": 449461,
                "relation_to_type": "type",
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                "ani": 87.0271,
                "matched_fragments": 1225,
                "total_fragments": 1891,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides carbamazepini",
                "strain": "strain=CBZ_1",
                "accession": "GCA_024614185.1",
                "taxid": 2854259,
                "species_taxid": 2854259,
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                "ani": 86.6576,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pimelobacter simplex",
                "strain": "strain=NBRC 12069",
                "accession": "GCA_006538965.1",
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                "status": "below_threshold"
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            {
                "organism_name": "Pimelobacter simplex",
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            },
            {
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                "species_taxid": 200618,
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                "ani": 85.4834,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides okcheonensis",
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                "accession": "GCA_020991065.1",
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                "species_taxid": 2894081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2655,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides furvisabuli",
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                "ani_threshold": 95,
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            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_013409625.1",
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                "mean_intra_species_ani": "N/A",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}