{ "type": "genome", "identifier": "GCF_013409905.1", "organism": "Arthrobacter cupressi", "title": "Arthrobacter cupressi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013409905.1", "bioproject": "PRJNA224116", "biosample": "SAMN05878285", "wgs_master": "JACCBL000000000.1", "refseq_category": "reference genome", "taxid": "1045773", "species_taxid": "1045773", "organism_name": "Arthrobacter cupressi", "infraspecific_name": "strain=DSM 24664", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340990v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013409905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/409/905/GCF_013409905.1_ASM1340990v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4091819", "genome_size_ungapped": "4091819", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013409905.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "3734", "protein_coding_gene_count": "3639", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter cupressi" ], "sample_taxid": [ "1045773" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 81.2211, "matched_fragments": 677, "total_fragments": 1363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8871, "matched_fragments": 705, "total_fragments": 1363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter terricola", "strain": "strain=JH1-1", "accession": "GCA_004354015.1", "taxid": 2547396, "species_taxid": 2547396, "relation_to_type": "type", "validated": true, "ani": 80.8084, "matched_fragments": 706, "total_fragments": 1363, "ani_threshold": 95, "status": "below_threshold" }, { 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "cupressi" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }