{ "type": "genome", "identifier": "GCF_013409935.1", "organism": "Streptosporangium sandarakinum", "title": "Streptosporangium sandarakinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013409935.1", "bioproject": "PRJNA224116", "biosample": "SAMN14502533", "wgs_master": "JACCCO000000000.1", "refseq_category": "reference genome", "taxid": "1260955", "species_taxid": "1260955", "organism_name": "Streptosporangium sandarakinum", "infraspecific_name": "strain=DSM 45763", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1340993v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013409935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/409/935/GCF_013409935.1_ASM1340993v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7647619", "genome_size_ungapped": "7647619", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013409935.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "6881", "protein_coding_gene_count": "6720", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptosporangium sandarakinum" ], "sample_taxid": [ "1260955" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.033 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 7.52, "strain_heterogeneity": 71.43, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7647619", "Number of Sequences": "4", "Longest Sequences (bp)": "4102733", "N50 (bp)": "4102733", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.5", "Number of CDSs": "6936", "Average Protein Length": "321.1", "Coding Ratio (%)": "87.4", "Number of rRNAs": "21", "Number of tRNAs": "78", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptosporangium sandarakinum", "strain": "strain=DSM 45763", "accession": "GCA_013409935.1", "taxid": 1260955, 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"type", "validated": true, "ani": 85.1557, "matched_fragments": 1799, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium minutum", "strain": "strain=M26", "accession": "GCA_002149035.1", "taxid": 569862, "species_taxid": 569862, "relation_to_type": "type", "validated": true, "ani": 85.0226, "matched_fragments": 1672, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium album", "strain": "strain=DSM 43023", "accession": "GCA_014203795.1", "taxid": 47479, "species_taxid": 47479, "relation_to_type": "type", "validated": true, "ani": 84.5362, "matched_fragments": 1599, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planomonospora parontospora subsp. antibiotica", "strain": "strain=NBRC 15869", "accession": "GCA_016863235.1", "taxid": 97193, "species_taxid": 58119, "relation_to_type": "type", "validated": true, "ani": 83.7961, "matched_fragments": 1439, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planomonospora parontospora subsp. antibiotica", "strain": "strain=JCM 3094", "accession": "GCA_014647955.1", "taxid": 97193, "species_taxid": 58119, "relation_to_type": "type", "validated": true, "ani": 83.7082, "matched_fragments": 1462, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=NBRC 15558", "accession": "GCA_016863155.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 83.5132, "matched_fragments": 1472, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=JCM 3166", "accession": "GCA_014648175.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 83.4715, "matched_fragments": 1499, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 80.8015, "matched_fragments": 1466, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 80.5534, "matched_fragments": 931, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aridisoli", "strain": "strain=KC333", "accession": "GCA_003236395.1", "taxid": 2070368, "species_taxid": 2070368, "relation_to_type": "type", "validated": true, "ani": 80.4401, "matched_fragments": 1244, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 80.2952, "matched_fragments": 1397, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 80.0203, "matched_fragments": 1374, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 79.938, "matched_fragments": 1354, "total_fragments": 2547, "ani_threshold": 95, "status": "below_threshold" } ], 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