{ "type": "genome", "identifier": "GCF_013410545.1", "organism": "Pseudoclavibacter chungangensis", "title": "Pseudoclavibacter chungangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013410545.1", "bioproject": "PRJNA224116", "biosample": "SAMN14908371", "wgs_master": "JACCFV000000000.1", "refseq_category": "reference genome", "taxid": "587635", "species_taxid": "587635", "organism_name": "Pseudoclavibacter chungangensis", "infraspecific_name": "strain=DSM 23821", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/13", "asm_name": "ASM1341054v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_013410545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/410/545/GCF_013410545.1_ASM1341054v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3985007", "genome_size_ungapped": "3985007", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013410545.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3568", "protein_coding_gene_count": "3432", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-13", "dateModified": "2020-07-13", "datePublished": "2020-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoclavibacter chungangensis" ], "sample_taxid": [ "587635" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.052 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3985007", "Number of Sequences": "1", "Longest Sequences (bp)": "3985007", "N50 (bp)": "3985007", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "3608", "Average Protein Length": "327.4", "Coding Ratio (%)": "88.9", "Number of rRNAs": "9", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoclavibacter chungangensis", "strain": "strain=DSM 23821", "accession": "GCA_013410545.1", "taxid": 587635, 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"total_fragments": 1328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces luteolus", "strain": "strain=JCM 11431", "accession": "GCA_009729855.1", "taxid": 88373, "species_taxid": 88373, "relation_to_type": "type", "validated": true, "ani": 77.9375, "matched_fragments": 418, "total_fragments": 1328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mediolanus", "strain": "strain=JCM 3346", "accession": "GCA_014648575.1", "taxid": 41986, "species_taxid": 41986, "relation_to_type": "type", "validated": true, "ani": 77.8959, "matched_fragments": 433, "total_fragments": 1328, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium herbarum", "strain": "strain=LMG19917T", "accession": "GCA_025000405.1", "taxid": 150122, "species_taxid": 150122, "relation_to_type": "suspected-type", "validated": true, "ani": 77.84, "matched_fragments": 293, "total_fragments": 1328, "ani_threshold": 95, "status": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoclavibacter", "chungangensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }