{
    "type": "genome",
    "identifier": "GCF_013416295.1",
    "organism": "Pusillimonas noertemannii",
    "title": "Pusillimonas noertemannii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "ELTE Eotvos Lorand University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013416295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15438383",
        "wgs_master": "JACCEX000000000.1",
        "refseq_category": "na",
        "taxid": "305977",
        "species_taxid": "305977",
        "organism_name": "Pusillimonas noertemannii",
        "infraspecific_name": "strain=DSM 10065",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/15",
        "asm_name": "ASM1341629v1",
        "asm_submitter": "ELTE Eotvos Lorand University",
        "gbrs_paired_asm": "GCA_013416295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/416/295/GCF_013416295.1_ASM1341629v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4213299",
        "genome_size_ungapped": "4213299",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "22",
        "contig_count": "22",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013416295.1-RS_2024_08_24",
        "annotation_date": "2024-08-24",
        "total_gene_count": "3972",
        "protein_coding_gene_count": "3886",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-15",
    "dateModified": "2020-07-15",
    "datePublished": "2020-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pusillimonas noertemannii"
        ],
        "sample_taxid": [
            "305977"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: River Elbe"
        ],
        "sample_host_location_id": [],
        "data_size": "1.177 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4213299",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "1351959",
        "N50 (bp)": "881362",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.6",
        "Number of CDSs": "3875",
        "Average Protein Length": "326.6",
        "Coding Ratio (%)": "90.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pusillimonas noertemannii",
                "strain": "strain=DSM 10065",
                "accession": "GCA_013416295.1",
                "taxid": 305977,
                "species_taxid": 305977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1394,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pusillimonas noertemannii",
                "strain": "strain=DSM 10065",
                "accession": "GCA_003545825.1",
                "taxid": 305977,
                "species_taxid": 305977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9994,
                "matched_fragments": 1388,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pusillimonas noertemannii",
                "strain": "strain=DSM 10065",
                "accession": "GCA_003096595.1",
                "taxid": 305977,
                "species_taxid": 305977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9959,
                "matched_fragments": 1384,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pusillimonas caeni",
                "strain": "strain=KCTC 42353",
                "accession": "GCA_003545815.1",
                "taxid": 1348472,
                "species_taxid": 1348472,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.715,
                "matched_fragments": 1010,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidimonas nitroreducens",
                "strain": "strain=SC-089",
                "accession": "GCA_002209565.1",
                "taxid": 683354,
                "species_taxid": 683354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8142,
                "matched_fragments": 470,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parapusillimonas granuli",
                "strain": "strain=LMG 24012",
                "accession": "GCA_013416525.1",
                "taxid": 380911,
                "species_taxid": 380911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7835,
                "matched_fragments": 466,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidimonas humi",
                "strain": "strain=DSM 25336",
                "accession": "GCA_019166065.1",
                "taxid": 683355,
                "species_taxid": 683355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5796,
                "matched_fragments": 452,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eoetvoesia caeni",
                "strain": "strain=PB3-7B",
                "accession": "GCA_022688825.1",
                "taxid": 645616,
                "species_taxid": 645616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1211,
                "matched_fragments": 508,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pertussis",
                "strain": "strain=18323",
                "accession": "GCA_000306945.1",
                "taxid": 520,
                "species_taxid": 520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.005,
                "matched_fragments": 428,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella bronchiseptica",
                "strain": "strain=CCUG 219",
                "accession": "GCA_021391275.1",
                "taxid": 518,
                "species_taxid": 518,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.9863,
                "matched_fragments": 428,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter xylosoxidans",
                "strain": "strain=PartM-Axylosoxidans-RM8376",
                "accession": "GCA_022870085.1",
                "taxid": 85698,
                "species_taxid": 85698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9335,
                "matched_fragments": 460,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pseudohinzii",
                "strain": "strain=8-296-03",
                "accession": "GCA_000657795.2",
                "taxid": 1331258,
                "species_taxid": 1331258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6711,
                "matched_fragments": 423,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=NCTC 13520",
                "accession": "GCA_024168865.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3819,
                "matched_fragments": 381,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ralstonia pseudosolanacearum",
                "strain": "strain=LMG 9673",
                "accession": "GCA_919586305.1",
                "taxid": 1310165,
                "species_taxid": 1310165,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1234,
                "matched_fragments": 240,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera humireducens",
                "strain": "strain=SgZ-1",
                "accession": "GCA_001051995.2",
                "taxid": 1134435,
                "species_taxid": 1134435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5025,
                "matched_fragments": 172,
                "total_fragments": 1395,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003096595.1",
                "gtdb_species": "s__Pusillimonas noertemannii",
                "ani": 99.9959,
                "matched_fragments": 1384,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pusillimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003545815.1",
                "gtdb_species": "s__Pusillimonas caeni",
                "ani": 86.6828,
                "matched_fragments": 1013,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pusillimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002209565.1",
                "gtdb_species": "s__Candidimonas nitroreducens",
                "ani": 79.8398,
                "matched_fragments": 467,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013416525.1",
                "gtdb_species": "s__Parapusillimonas granuli",
                "ani": 79.7835,
                "matched_fragments": 466,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Parapusillimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_019166065.1",
                "gtdb_species": "s__Candidimonas humi",
                "ani": 79.5901,
                "matched_fragments": 451,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013416435.1",
                "gtdb_species": "s__Parapusillimonas sp013416435",
                "ani": 79.2911,
                "matched_fragments": 396,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Parapusillimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001270295.1",
                "gtdb_species": "s__Achromobacter sp001270295",
                "ani": 79.2877,
                "matched_fragments": 375,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017356245.1",
                "gtdb_species": "s__Bordetella_A petrii_D",
                "ani": 79.2871,
                "matched_fragments": 476,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002261345.1",
                "gtdb_species": "s__Bordetella_A sp002261345",
                "ani": 79.2398,
                "matched_fragments": 446,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "99.26",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017745595.1",
                "gtdb_species": "s__Bordetella_A petrii_C",
                "ani": 79.2287,
                "matched_fragments": 475,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129885.1",
                "gtdb_species": "s__Candidimonas_A bauzanensis",
                "ani": 79.0025,
                "matched_fragments": 460,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Candidimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002261225.1",
                "gtdb_species": "s__Bordetella_C sp002261225",
                "ani": 78.7137,
                "matched_fragments": 420,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002261265.1",
                "gtdb_species": "s__Bordetella_A sp002261265",
                "ani": 78.639,
                "matched_fragments": 388,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002188635.1",
                "gtdb_species": "s__Pigmentiphaga sp002188635",
                "ani": 78.0373,
                "matched_fragments": 389,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pigmentiphaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001051995.2",
                "gtdb_species": "s__Thauera humireducens",
                "ani": 76.503,
                "matched_fragments": 172,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001577345.1",
                "gtdb_species": "s__Gallionella acididurans",
                "ani": 76.2949,
                "matched_fragments": 60,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Gallionellaceae;g__Gallionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003702045.1",
                "gtdb_species": "s__Pseudomonas_E viridiflava_C",
                "ani": 75.7493,
                "matched_fragments": 56,
                "total_fragments": 1395,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.096,
        "doubling_h": null,
        "growth_tmp": 32.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.2,
        "genome_size": 4060232.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pusillimonas",
        "noertemannii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}