{ "type": "genome", "identifier": "GCF_013416885.1", "organism": "Vibrio gallaecicus", "title": "Vibrio gallaecicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Oceanology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013416885.1", "bioproject": "PRJNA224116", "biosample": "SAMN11584348", "wgs_master": "SZZR00000000.1", "refseq_category": "na", "taxid": "552386", "species_taxid": "552386", "organism_name": "Vibrio gallaecicus", "infraspecific_name": "strain=VB 8.9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/16", "asm_name": "ASM1341688v1", "asm_submitter": "Institute of Oceanology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_013416885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/416/885/GCF_013416885.1_ASM1341688v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4999218", "genome_size_ungapped": "4999218", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013416885.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "4500", "protein_coding_gene_count": "4325", "non_coding_gene_count": "106", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-16", "dateModified": "2020-07-16", "datePublished": "2020-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio gallaecicus" ], "sample_taxid": [ "552386" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"GCA_024347315.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 82.9783, "matched_fragments": 773, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pomeroyi", "strain": "strain=LMG 20537", "accession": "GCA_024347595.1", "taxid": 198832, "species_taxid": 198832, "relation_to_type": "type", "validated": true, "ani": 82.9277, "matched_fragments": 767, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio toranzoniae", "strain": "strain=CECT 7225", "accession": "GCA_900089765.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, "ani": 82.811, "matched_fragments": 710, "total_fragments": 1640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, 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"status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005281825.1", "gtdb_species": "s__Vibrio gallaecicus", "ani": 100.0, "matched_fragments": 1638, "total_fragments": 1640, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_013114625.1", "gtdb_species": "s__Vibrio sp013114625", "ani": 91.3722, "matched_fragments": 1382, "total_fragments": 1640, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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