{ "type": "genome", "identifier": "GCF_013433315.1", "organism": "Pseudomonas crudilactis", "title": "Pseudomonas crudilactis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universite de Caen Normandie", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013433315.1", "bioproject": "PRJNA224116", "biosample": "SAMN13762321", "wgs_master": "WXVV00000000.1", "refseq_category": "reference genome", "taxid": "2697028", "species_taxid": "2697028", "organism_name": "Pseudomonas crudilactis", "infraspecific_name": "strain=UCMA 17988", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/21", "asm_name": "ASM1343331v1", "asm_submitter": "Universite de Caen Normandie", "gbrs_paired_asm": "GCA_013433315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/433/315/GCF_013433315.1_ASM1343331v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6643144", "genome_size_ungapped": "6643144", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013433315.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6030", "protein_coding_gene_count": "5861", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-21", "dateModified": "2020-07-21", "datePublished": "2020-07-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas crudilactis" ], "sample_taxid": [ "2697028" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Normandie, Calvados" ], "sample_host_location_id": [], "data_size": "1.862 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6643144", "Number of Sequences": "82", "Longest Sequences (bp)": "582076", "N50 (bp)": "213030", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "5939", "Average Protein Length": "327.7", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas crudilactis", "strain": "strain=UCMA 17988", "accession": "GCA_013433315.1", "taxid": 2697028, "species_taxid": 2697028, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2181, "total_fragments": 2185, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas tensinigenes", "strain": "strain=ZA 5.3", "accession": "GCA_014268445.2", "taxid": 2745511, "species_taxid": 2745511, "relation_to_type": "type", "validated": true, "ani": 94.197, "matched_fragments": 2000, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas zeae", "strain": "strain=OE 48.2", "accession": "GCA_014268485.2", "taxid": 2745510, "species_taxid": 2745510, "relation_to_type": "type", "validated": true, "ani": 92.587, "matched_fragments": 1857, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas neuropathica", "strain": "strain=P155", "accession": "GCA_015461835.1", "taxid": 2730425, "species_taxid": 2730425, "relation_to_type": "type", "validated": true, "ani": 92.4673, "matched_fragments": 1853, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 92.4494, "matched_fragments": 1888, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas monsensis", "strain": "strain=PGSB 8459", "accession": "GCA_014268495.2", "taxid": 2745509, "species_taxid": 2745509, "relation_to_type": "type", "validated": true, "ani": 89.4716, "matched_fragments": 1784, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=LMG 25716", "accession": "GCA_002813455.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 89.2873, "matched_fragments": 1728, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=a390", "accession": "GCA_003031005.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 89.2854, "matched_fragments": 1679, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 87.9606, "matched_fragments": 1714, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 87.7926, "matched_fragments": 1662, "total_fragments": 2185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pergaminensis", "strain": 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