{ "type": "genome", "identifier": "GCF_013520865.1", "organism": "Microvirga mediterraneensis", "title": "Microvirga mediterraneensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IHU - Mediterranee Infection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013520865.1", "bioproject": "PRJNA224116", "biosample": "SAMN15543017", "wgs_master": "JACDXJ000000000.1", "refseq_category": "reference genome", "taxid": "2754695", "species_taxid": "2754695", "organism_name": "Microvirga mediterraneensis", "infraspecific_name": "strain=Marseille-Q2068", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/23", "asm_name": "ASM1352086v1", "asm_submitter": "IHU - Mediterranee Infection", "gbrs_paired_asm": "GCA_013520865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/520/865/GCF_013520865.1_ASM1352086v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5347712", "genome_size_ungapped": "5347712", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013520865.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5109", "protein_coding_gene_count": "4961", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-23", "dateModified": "2020-07-23", "datePublished": "2020-07-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga mediterraneensis" ], "sample_taxid": [ "2754695" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France:Marseille" ], "sample_host_location_id": [], "data_size": "1.486 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5347712", "Number of Sequences": "8", "Longest Sequences (bp)": "4703417", "N50 (bp)": "4703417", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "5123", "Average Protein Length": "301.0", "Coding Ratio (%)": "86.5", "Number of rRNAs": "15", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga mediterraneensis", "strain": "strain=Marseille-Q2068", "accession": "GCA_013520865.1", "taxid": 2754695, 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"below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 82.5969, "matched_fragments": 845, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga makkahensis", "strain": "strain=KCTC 23863", "accession": "GCA_009830105.1", "taxid": 1128670, "species_taxid": 1128670, "relation_to_type": "type", "validated": true, "ani": 82.2976, "matched_fragments": 868, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga vignae", "strain": "strain=BR3299", "accession": "GCA_001017175.1", "taxid": 1225564, "species_taxid": 1225564, "relation_to_type": "type", "validated": true, "ani": 82.1996, "matched_fragments": 907, "total_fragments": 1779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas soli", 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