{
    "type": "genome",
    "identifier": "GCF_013618625.1",
    "organism": "Bremerella alba",
    "title": "Bremerella alba",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud Universiteit Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013618625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14930176",
        "wgs_master": "JABRWO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "980252",
        "species_taxid": "980252",
        "organism_name": "Bremerella alba",
        "infraspecific_name": "strain=FF15",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/24",
        "asm_name": "ASM1361862v1",
        "asm_submitter": "Radboud Universiteit Nijmegen",
        "gbrs_paired_asm": "GCA_013618625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/618/625/GCF_013618625.1_ASM1361862v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6373365",
        "genome_size_ungapped": "6373258",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013618625.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "5111",
        "protein_coding_gene_count": "5016",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-24",
    "dateModified": "2020-07-24",
    "datePublished": "2020-07-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bremerella alba"
        ],
        "sample_taxid": [
            "980252"
        ],
        "sample_host_organism": [
            "Fucus vesiculosus var. spiralis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Portugal: Porto, Foz beach"
        ],
        "sample_host_location_id": [],
        "data_size": "1.818 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6373365",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "822942",
        "N50 (bp)": "405041",
        "Gap Ratio (%)": "0.001679",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "5115",
        "Average Protein Length": "357.6",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bremerella alba",
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                "species_taxid": 980252,
                "relation_to_type": "type",
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            },
            {
                "organism_name": "Bremerella volcania",
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                "accession": "GCA_007748115.1",
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                "species_taxid": 2527984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9741,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastopirellula retiformator",
                "strain": "strain=Enr8",
                "accession": "GCA_007859755.1",
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                "species_taxid": 2527970,
                "relation_to_type": "type",
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                "ani": 76.6532,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastopirellula marina",
                "strain": "strain=DSM 3645",
                "accession": "GCA_000153105.1",
                "taxid": 124,
                "species_taxid": 124,
                "relation_to_type": "suspected-type",
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                "ani": 76.6266,
                "matched_fragments": 173,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Posidoniimonas corsicana",
                "strain": "strain=KOR34",
                "accession": "GCA_007859765.1",
                "taxid": 1938618,
                "species_taxid": 1938618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9835,
                "matched_fragments": 51,
                "total_fragments": 2111,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacipirellula limnantheis",
                "strain": "strain=I41",
                "accession": "GCA_007746075.1",
                "taxid": 2528024,
                "species_taxid": 2528024,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7487,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_013618625.1",
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                "matched_fragments": 2107,
                "total_fragments": 2111,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_007748115.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002967715.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_016124445.1",
                "gtdb_species": "s__Bremerella sp016124445",
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003335505.1",
                "gtdb_species": "s__Bremerella cremea_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002967765.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Bremerella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Bremerella",
        "alba"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}