{ "type": "genome", "identifier": "GCF_013618945.1", "organism": "Mesobacillus zeae", "title": "Mesobacillus zeae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013618945.1", "bioproject": "PRJNA224116", "biosample": "SAMN15069604", "wgs_master": "JABUHL000000000.1", "refseq_category": "na", "taxid": "1917180", "species_taxid": "1917180", "organism_name": "Mesobacillus zeae", "infraspecific_name": "strain=JJ-247", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/24", "asm_name": "ASM1361894v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_013618945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/618/945/GCF_013618945.1_ASM1361894v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4287166", "genome_size_ungapped": "4287166", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "94", "contig_count": "94", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013618945.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "4551", "protein_coding_gene_count": "4271", "non_coding_gene_count": "125", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-24", "dateModified": "2020-07-24", "datePublished": "2020-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesobacillus zeae" ], "sample_taxid": [ "1917180" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Nebraska, Dunbar" ], "sample_host_location_id": [], "data_size": "1.221 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4287166", "Number of Sequences": "94", "Longest Sequences (bp)": "801565", "N50 (bp)": "264704", "Gap Ratio (%)": "0.000327", "GCcontent (%)": "43.2", "Number of CDSs": "4419", "Average Protein Length": "265.3", "Coding Ratio (%)": "82.0", "Number of rRNAs": "9", "Number of tRNAs": "91", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesobacillus zeae", "strain": "strain=JJ-247", "accession": "GCA_013618945.1", "taxid": 1917180, "species_taxid": 1917180, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1400, "total_fragments": 1401, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mesobacillus zeae", "strain": "strain=JJ-247", "accession": "GCA_003570705.1", "taxid": 1917180, "species_taxid": 1917180, "relation_to_type": "type", "validated": true, "ani": 99.9782, "matched_fragments": 1361, "total_fragments": 1401, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 78.5613, "matched_fragments": 137, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus harenae", "strain": "strain=Y40", "accession": "GCA_013343715.1", "taxid": 2213203, "species_taxid": 2213203, "relation_to_type": "type", "validated": true, "ani": 78.1677, "matched_fragments": 144, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus novalis", "strain": "strain=FJAT-14227", "accession": "GCA_001636395.1", "taxid": 220687, "species_taxid": 220687, "relation_to_type": "type", "validated": true, "ani": 77.851, "matched_fragments": 124, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus foraminis", "strain": "strain=CV53", "accession": "GCA_013618915.1", "taxid": 279826, "species_taxid": 279826, "relation_to_type": "type", "validated": true, "ani": 77.8306, "matched_fragments": 216, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus flavus", "strain": "strain=KIGAM252", "accession": "GCA_018283675.1", "taxid": 2823519, "species_taxid": 2823519, "relation_to_type": "type", "validated": true, "ani": 77.8285, "matched_fragments": 68, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus massiliglaciei", "strain": "strain=Marseille-P2600", "accession": "GCA_900098925.1", "taxid": 1816693, "species_taxid": 1816693, "relation_to_type": "type", "validated": true, "ani": 77.7834, "matched_fragments": 71, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus subterraneus", "strain": "strain=DSM 13966", "accession": "GCA_003937825.1", "taxid": 285983, "species_taxid": 285983, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6871, "matched_fragments": 199, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus subtilis subsp. subtilis", "strain": "strain=168", "accession": "GCA_024917115.1", "taxid": 135461, "species_taxid": 1423, "relation_to_type": "type", "validated": true, "ani": 77.682, "matched_fragments": 60, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus glennii", "strain": "strain=V44-8", "accession": "GCA_003429105.1", "taxid": 2303991, "species_taxid": 2303991, 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77.4869, "matched_fragments": 123, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus selenatarsenatis", "strain": "strain=SF-1", "accession": "GCA_000813125.1", "taxid": 388741, "species_taxid": 388741, "relation_to_type": "type", "validated": true, "ani": 77.4526, "matched_fragments": 189, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 77.3383, "matched_fragments": 101, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus tequilensis", "strain": "strain=NCTC13306", "accession": "GCA_900445435.1", "taxid": 227866, "species_taxid": 227866, "relation_to_type": "type", "validated": true, "ani": 77.2413, "matched_fragments": 57, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsibacillus albus", "strain": "strain=GY 10110", "accession": "GCA_003668575.1", "taxid": 2478915, "species_taxid": 2478915, "relation_to_type": "type", "validated": true, "ani": 77.1084, "matched_fragments": 81, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus firmus", "strain": "strain=NBRC 15306", "accession": "GCA_001591465.1", "taxid": 1399, "species_taxid": 1399, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0523, "matched_fragments": 127, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus kandeliae", "strain": "strain=GX 13764", "accession": "GCA_021166585.1", "taxid": 2900151, "species_taxid": 2900151, "relation_to_type": "type", "validated": true, "ani": 76.8377, "matched_fragments": 75, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003570705.1", "gtdb_species": "s__Bacillus_AZ zeae", "ani": 99.9782, "matched_fragments": 1361, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AZ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900166585.1", "gtdb_species": "s__Mesobacillus jeotgali_A", "ani": 77.7129, "matched_fragments": 203, "total_fragments": 1401, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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