{ "type": "genome", "identifier": "GCF_013623835.1", "organism": "Brevibacterium oceani", "title": "Brevibacterium oceani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute Of Oceanography,MNR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013623835.1", "bioproject": "PRJNA224116", "biosample": "SAMN14820475", "wgs_master": "JABKDE000000000.1", "refseq_category": "na", "taxid": "358099", "species_taxid": "358099", "organism_name": "Brevibacterium oceani", "infraspecific_name": "strain=BBH7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/24", "asm_name": "ASM1362383v1", "asm_submitter": "Third Institute Of Oceanography,MNR", "gbrs_paired_asm": "GCA_013623835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/623/835/GCF_013623835.1_ASM1362383v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4481272", "genome_size_ungapped": "4481172", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013623835.1-RS_2024_09_07", "annotation_date": "2024-09-07", "total_gene_count": "4106", "protein_coding_gene_count": "3999", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-24", "dateModified": "2020-07-24", "datePublished": "2020-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacterium oceani" ], "sample_taxid": [ "358099" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean:Chagos Trench" ], "sample_host_location_id": [], "data_size": "1.230 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4481272", "Number of Sequences": "20", "Longest Sequences (bp)": "708405", "N50 (bp)": "546120", "Gap Ratio (%)": "0.002232", "GCcontent (%)": "65.4", "Number of CDSs": "4096", "Average Protein Length": "328.3", "Coding Ratio (%)": "90.0", "Number of rRNAs": "2", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacterium oceani", "strain": "strain=BBH7", "accession": "GCA_013623835.1", "taxid": 358099, "species_taxid": 358099, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1484, "total_fragments": 1485, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacterium atlanticum", "strain": "strain=WO024", "accession": "GCA_011617245.1", "taxid": 2697563, "species_taxid": 2697563, "relation_to_type": "type", "validated": true, "ani": 91.477, "matched_fragments": 1155, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium limosum", "strain": "strain=o2", "accession": "GCA_011617705.1", "taxid": 2697565, "species_taxid": 2697565, "relation_to_type": "type", "validated": true, "ani": 85.4961, "matched_fragments": 1061, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=FXJ8.269", "accession": "GCA_013623905.1", "taxid": 1857024, "species_taxid": 1857024, "relation_to_type": "type", "validated": true, "ani": 85.4193, "matched_fragments": 1086, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium sediminis", "strain": "strain=CGMCC 1.15472", "accession": "GCA_014643055.1", "taxid": 1857024, "species_taxid": 1857024, "relation_to_type": "type", "validated": true, "ani": 85.399, "matched_fragments": 1091, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium pigmentatum", "strain": "strain=YB235", "accession": "GCA_011617465.1", "taxid": 1496080, "species_taxid": 1496080, "relation_to_type": "type", "validated": true, "ani": 85.3762, "matched_fragments": 1034, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium permense", "strain": "strain=VKM Ac-2280", "accession": "GCA_013280495.1", "taxid": 234834, "species_taxid": 234834, "relation_to_type": "type", "validated": true, "ani": 85.3245, "matched_fragments": 959, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_900169165.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2775, "matched_fragments": 982, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium linens", "strain": "strain=ATCC 9172", "accession": "GCA_008868375.1", "taxid": 1703, "species_taxid": 1703, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2616, "matched_fragments": 988, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium epidermidis", "strain": "strain=NBRC 14811", "accession": "GCA_001570805.1", "taxid": 1698, "species_taxid": 1698, "relation_to_type": "type", "validated": true, "ani": 85.1379, "matched_fragments": 990, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium siliguriense", "strain": "strain=DSM 23676", "accession": "GCA_900105315.1", "taxid": 1136497, "species_taxid": 1136497, "relation_to_type": "type", "validated": true, "ani": 84.9245, "matched_fragments": 1020, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium casei", "strain": "strain=FDAARGOS_936", "accession": "GCA_016026595.1", "taxid": 33889, "species_taxid": 33889, "relation_to_type": "type", "validated": true, "ani": 81.9831, "matched_fragments": 840, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium zhoupengii", "strain": "strain=HY170", "accession": "GCA_021117425.1", "taxid": 2898795, "species_taxid": 2898795, "relation_to_type": "type", "validated": true, "ani": 81.2827, "matched_fragments": 868, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium antiquum", "strain": "strain=DSM 21545", "accession": "GCA_016107655.1", "taxid": 234835, "species_taxid": 234835, "relation_to_type": "type", "validated": true, "ani": 81.111, "matched_fragments": 858, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium gallinarum", "strain": "strain=Re57", "accession": "GCA_014836885.1", "taxid": 2762220, "species_taxid": 2762220, "relation_to_type": "type", "validated": true, "ani": 78.9896, "matched_fragments": 411, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium daeguense", "strain": "strain=DSM 27938", "accession": "GCA_021729135.1", "taxid": 909936, "species_taxid": 909936, "relation_to_type": "type", "validated": true, "ani": 77.9974, "matched_fragments": 353, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminivirga luteola", "strain": "strain=CGMCC 1.12785", "accession": "GCA_021729215.1", "taxid": 1774748, "species_taxid": 1774748, "relation_to_type": "type", "validated": true, "ani": 77.8945, "matched_fragments": 228, "total_fragments": 1485, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013623835.1", "gtdb_species": "s__Brevibacterium oceani", "ani": 100.0, "matched_fragments": 1484, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.48", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_011617245.1", "gtdb_species": "s__Brevibacterium sp011617245", "ani": 91.4807, "matched_fragments": 1155, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745485.1", "gtdb_species": "s__Brevibacterium sp004745485", "ani": 85.9643, "matched_fragments": 1074, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011617705.1", "gtdb_species": "s__Brevibacterium sp011617705", "ani": 85.4935, "matched_fragments": 1062, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.55", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013623905.1", "gtdb_species": "s__Brevibacterium sediminis", "ani": 85.4243, "matched_fragments": 1086, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "97.49", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_012844365.1", "gtdb_species": "s__Brevibacterium sp012844365", "ani": 85.4104, "matched_fragments": 1050, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011617465.1", "gtdb_species": "s__Brevibacterium sp011617465", "ani": 85.3729, "matched_fragments": 1035, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013280495.1", "gtdb_species": "s__Brevibacterium permense", "ani": 85.3132, "matched_fragments": 960, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900169165.1", "gtdb_species": "s__Brevibacterium linens", "ani": 85.2665, "matched_fragments": 983, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "96.02", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001570805.1", "gtdb_species": "s__Brevibacterium epidermidis", "ani": 85.1486, "matched_fragments": 989, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.16", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_019117545.1", "gtdb_species": "s__Brevibacterium intestinavium", "ani": 85.0704, "matched_fragments": 824, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004745075.1", "gtdb_species": "s__Brevibacterium sp004745075", "ani": 85.0143, "matched_fragments": 1029, "total_fragments": 1485, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Brevibacteriaceae;g__Brevibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.041, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 27.0, "optimum_ph": 6.8, "genome_size": 3680194.756, "gc_content": 64.593, "coding_genes": 3606.375, "rRNA16S_genes": 4.0, "tRNA_genes": 48.5, "gram_stain": 1.0, "sporulation": 0.052, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevibacterium", "oceani" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }