{ "type": "genome", "identifier": "GCF_013624435.2", "organism": "Nocardioides campestrisoli", "title": "Nocardioides campestrisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013624435.2", "bioproject": "PRJNA224116", "biosample": "SAMN14938330", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2736757", "species_taxid": "2736757", "organism_name": "Nocardioides campestrisoli", "infraspecific_name": "strain=MC1495", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/29", "asm_name": "ASM1362443v2", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_013624435.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/624/435/GCF_013624435.2_ASM1362443v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4206296", "genome_size_ungapped": "4206296", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013624435.2-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3996", "protein_coding_gene_count": "3926", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-29", "dateModified": "2020-09-29", "datePublished": "2020-09-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides campestrisoli" ], "sample_taxid": [ "2736757" ], "sample_host_organism": [ "soil" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.112 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4206296", "Number of Sequences": "1", "Longest Sequences (bp)": "4206296", "N50 (bp)": "4206296", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "3972", "Average Protein Length": "329.0", "Coding Ratio (%)": "93.2", "Number of rRNAs": "9", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides solisilvae", "strain": "strain=Ka25", "accession": "GCA_003194625.1", "taxid": 1542435, "species_taxid": 1542435, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 80.8672, "matched_fragments": 681, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 80.8383, "matched_fragments": 640, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dokdonensis", "strain": "strain=FR1436", "accession": "GCA_001653335.1", "taxid": 450734, "species_taxid": 450734, "relation_to_type": "type", "validated": true, "ani": 80.8345, "matched_fragments": 658, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 80.828, "matched_fragments": 712, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 80.7854, "matched_fragments": 656, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 80.755, "matched_fragments": 595, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", 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