{ "type": "genome", "identifier": "GCF_013744875.1", "organism": "Nocardia huaxiensis", "title": "Nocardia huaxiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "West China Hospital, Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013744875.1", "bioproject": "PRJNA224116", "biosample": "SAMN15566273", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2755382", "species_taxid": "2755382", "organism_name": "Nocardia huaxiensis", "infraspecific_name": "strain=WCH-YHL-001", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/27", "asm_name": "ASM1374487v1", "asm_submitter": "West China Hospital, Sichuan University", "gbrs_paired_asm": "GCA_013744875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/744/875/GCF_013744875.1_ASM1374487v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8339910", "genome_size_ungapped": "8339910", "gc_percent": "68.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013744875.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "7647", "protein_coding_gene_count": "7478", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-27", "dateModified": "2020-07-27", "datePublished": "2020-07-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia huaxiensis" ], "sample_taxid": [ "2755382" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chengdu" ], "sample_host_location_id": [], "data_size": "2.274 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8339910", "Number of Sequences": "1", "Longest Sequences (bp)": "8339910", "N50 (bp)": "8339910", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "7710", "Average Protein Length": "326.6", "Coding Ratio (%)": "90.6", "Number of rRNAs": "12", "Number of tRNAs": "88", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia huaxiensis", "strain": "strain=WCH-YHL-001", "accession": "GCA_013744875.1", "taxid": 2755382, "species_taxid": 2755382, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2779, "total_fragments": 2779, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia acididurans", "strain": "strain=LPG 2", "accession": "GCA_016741815.1", "taxid": 2802282, "species_taxid": 2802282, "relation_to_type": "type", "validated": true, "ani": 87.0184, "matched_fragments": 2027, "total_fragments": 2779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia yamanashiensis", "strain": "strain=NBRC 100130", "accession": "GCA_001613325.1", "taxid": 209247, "species_taxid": 209247, "relation_to_type": "type", "validated": true, "ani": 83.7331, "matched_fragments": 1769, "total_fragments": 2779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia crassostreae", "strain": "strain=NBRC 100342", "accession": "GCA_001613405.1", "taxid": 53428, "species_taxid": 53428, "relation_to_type": "type", "validated": true, "ani": 83.3315, "matched_fragments": 1647, "total_fragments": 2779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia seriolae", "strain": "strain=NBRC 15557", "accession": "GCA_007990715.1", "taxid": 37332, "species_taxid": 37332, "relation_to_type": "type", "validated": true, "ani": 83.3141, "matched_fragments": 1549, "total_fragments": 2779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia concava", "strain": "strain=NBRC 100430", "accession": "GCA_000308815.1", "taxid": 257281, "species_taxid": 257281, "relation_to_type": "type", "validated": true, "ani": 83.2053, "matched_fragments": 1698, "total_fragments": 2779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia terrae", "strain": "strain=ET3-3", "accession": "GCA_009760405.1", "taxid": 2675851, "species_taxid": 2675851, "relation_to_type": "type", "validated": true, "ani": 83.0583, "matched_fragments": 1679, "total_fragments": 2779, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia niigatensis", 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