{
    "type": "genome",
    "identifier": "GCF_013778325.1",
    "organism": "Sphingomonas chungangi",
    "title": "Sphingomonas chungangi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013778325.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15455048",
        "wgs_master": "JACEIB000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2683589",
        "species_taxid": "2683589",
        "organism_name": "Sphingomonas chungangi",
        "infraspecific_name": "strain=CGMCC 1.13654",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/27",
        "asm_name": "ASM1377832v1",
        "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
        "gbrs_paired_asm": "GCA_013778325.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/778/325/GCF_013778325.1_ASM1377832v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4369990",
        "genome_size_ungapped": "4369990",
        "gc_percent": "66.000000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013778325.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "4333",
        "protein_coding_gene_count": "4248",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-27",
    "dateModified": "2020-07-27",
    "datePublished": "2020-07-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingomonas chungangi"
        ],
        "sample_taxid": [
            "2683589"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.196 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4369990",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "769913",
        "N50 (bp)": "589653",
        "Gap Ratio (%)": "0.000023",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "4299",
        "Average Protein Length": "309.0",
        "Coding Ratio (%)": "91.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sphingomonas chungangi",
                "strain": "strain=CGMCC 1.13654",
                "accession": "GCA_013778325.1",
                "taxid": 2683589,
                "species_taxid": 2683589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1443,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphingomonas oligoaromativorans",
                "strain": "strain=DSM 102246",
                "accession": "GCA_011762195.1",
                "taxid": 575322,
                "species_taxid": 575322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9894,
                "matched_fragments": 703,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas morindae",
                "strain": "strain=NBD5",
                "accession": "GCA_023822065.1",
                "taxid": 1541170,
                "species_taxid": 1541170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6349,
                "matched_fragments": 587,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas fennica",
                "strain": "strain=K101",
                "accession": "GCA_003034225.1",
                "taxid": 114404,
                "species_taxid": 114404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7121,
                "matched_fragments": 488,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas profundi",
                "strain": "strain=LMO-1",
                "accession": "GCA_009739515.1",
                "taxid": 2681549,
                "species_taxid": 2681549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.599,
                "matched_fragments": 545,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizorhabdus dicambivorans",
                "strain": "strain=Ndbn-20",
                "accession": "GCA_002355275.1",
                "taxid": 1850238,
                "species_taxid": 1850238,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4752,
                "matched_fragments": 501,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizorhabdus histidinilytica",
                "strain": "strain=UM2",
                "accession": "GCA_900167915.1",
                "taxid": 439228,
                "species_taxid": 439228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.402,
                "matched_fragments": 515,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas laterariae",
                "strain": "strain=LNB2",
                "accession": "GCA_900188165.1",
                "taxid": 861865,
                "species_taxid": 861865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1624,
                "matched_fragments": 445,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas solaris",
                "strain": "strain=R4DWN",
                "accession": "GCA_007785815.1",
                "taxid": 2529389,
                "species_taxid": 2529389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1399,
                "matched_fragments": 505,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas formosensis",
                "strain": "strain=CC-Nfb-2",
                "accession": "GCA_009755815.1",
                "taxid": 861534,
                "species_taxid": 861534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0859,
                "matched_fragments": 544,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas yunnanensis",
                "strain": "strain=YIM 3",
                "accession": "GCA_019898765.1",
                "taxid": 310400,
                "species_taxid": 310400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0523,
                "matched_fragments": 477,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas vulcanisoli",
                "strain": "strain=CECT 8804",
                "accession": "GCA_011761305.1",
                "taxid": 1658060,
                "species_taxid": 1658060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9703,
                "matched_fragments": 426,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas sanxanigenens",
                "strain": "strain=NX02",
                "accession": "GCA_000512205.2",
                "taxid": 397260,
                "species_taxid": 397260,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9461,
                "matched_fragments": 525,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas changnyeongensis",
                "strain": "strain=C33",
                "accession": "GCA_009913435.1",
                "taxid": 2698679,
                "species_taxid": 2698679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7543,
                "matched_fragments": 376,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas flavalba",
                "strain": "strain=ZLT-5",
                "accession": "GCA_004796535.1",
                "taxid": 2559804,
                "species_taxid": 2559804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6241,
                "matched_fragments": 398,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas hylomeconis",
                "strain": "strain=CCTCC AB 2013304",
                "accession": "GCA_025370105.1",
                "taxid": 1395958,
                "species_taxid": 1395958,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5356,
                "matched_fragments": 453,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingobium fuchskuhlense",
                "strain": "strain=FNE08-7",
                "accession": "GCA_001519075.1",
                "taxid": 1117702,
                "species_taxid": 1117702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4849,
                "matched_fragments": 293,
                "total_fragments": 1444,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013778325.1",
                "gtdb_species": "s__Sphingomonas_N chungangi",
                "ani": 100.0,
                "matched_fragments": 1443,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_N",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000333335.1",
                "gtdb_species": "s__Sphingomonas_N sp000333335",
                "ani": 87.1142,
                "matched_fragments": 648,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_N",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000383095.1",
                "gtdb_species": "s__Sphingomonas_N sp000383095",
                "ani": 83.1527,
                "matched_fragments": 682,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_N",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011762195.1",
                "gtdb_species": "s__Sphingomonas_N oligoaromativorans",
                "ani": 82.9891,
                "matched_fragments": 703,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_N",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903871605.1",
                "gtdb_species": "s__Sphingomonas_N sp903871605",
                "ani": 82.0231,
                "matched_fragments": 703,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_N",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000016765.1",
                "gtdb_species": "s__Rhizorhabdus wittichii",
                "ani": 79.7808,
                "matched_fragments": 552,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_013113735.1",
                "gtdb_species": "s__Sphingomonas_I sp013113735",
                "ani": 79.4221,
                "matched_fragments": 519,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_I",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_903644055.1",
                "gtdb_species": "s__Sphingomonas_I sp903644055",
                "ani": 79.3522,
                "matched_fragments": 338,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_I",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000512205.2",
                "gtdb_species": "s__Sphingomonas_D sanxanigenens",
                "ani": 78.956,
                "matched_fragments": 525,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014396585.1",
                "gtdb_species": "s__Sphingomicrobium rhizophilum",
                "ani": 77.9866,
                "matched_fragments": 270,
                "total_fragments": 1444,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.288,
        "cell_length": 0.14,
        "doubling_h": null,
        "growth_tmp": 28.338,
        "optimum_tmp": 28.407,
        "optimum_ph": 7.016,
        "genome_size": 4164406.103,
        "gc_content": 66.116,
        "coding_genes": 4592.69,
        "rRNA16S_genes": 2.285,
        "tRNA_genes": 51.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.586,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.98,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.019
    },
    "_genome_taxon": [
        "Sphingomonas",
        "chungangi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}