{ "type": "genome", "identifier": "GCF_013778505.1", "organism": "Pseudomonas sivasensis", "title": "Pseudomonas sivasensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Balearic Islands", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013778505.1", "bioproject": "PRJNA224116", "biosample": "SAMN14331050", "wgs_master": "JAAOWU000000000.1", "refseq_category": "na", "taxid": "1880678", "species_taxid": "1880678", "organism_name": "Pseudomonas sivasensis", "infraspecific_name": "strain=P7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/27", "asm_name": "ASM1377850v1", "asm_submitter": "University of Balearic Islands", "gbrs_paired_asm": "GCA_013778505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/778/505/GCF_013778505.1_ASM1377850v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6393295", "genome_size_ungapped": "6392895", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013778505.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5860", "protein_coding_gene_count": "5676", "non_coding_gene_count": "66", "pubmed_id": "32690194" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-27", "dateModified": "2020-07-27", "datePublished": "2020-07-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sivasensis" ], "sample_taxid": [ "1880678" ], "sample_host_organism": [ "Oncorhynchus mykiss" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey: Central Anatolia, Kayseri" ], "sample_host_location_id": [], "data_size": "1.799 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6393295", "Number of Sequences": "54", "Longest Sequences (bp)": "770236", "N50 (bp)": "243419", "Gap Ratio (%)": "0.006257", "GCcontent (%)": "59.5", "Number of CDSs": "5810", "Average Protein Length": "324.2", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas marginalis", "strain": "strain=DSM 13124", "accession": "GCA_007858155.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 89.6836, 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2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas marginalis", "strain": "strain=ICMP 3553", "accession": "GCA_003700725.1", "taxid": 298, "species_taxid": 298, "relation_to_type": "suspected-type", "validated": true, "ani": 88.2163, "matched_fragments": 1555, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_001730615.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.1071, "matched_fragments": 1586, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas simiae", "strain": "strain=CCUG 50988", "accession": "GCA_900111895.1", "taxid": 321846, "species_taxid": 321846, "relation_to_type": "type", "validated": true, "ani": 88.0861, "matched_fragments": 1577, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 88.0106, "matched_fragments": 1596, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas canadensis", "strain": "strain=2-92", "accession": "GCA_000503215.1", "taxid": 915099, "species_taxid": 915099, "relation_to_type": "type", "validated": true, "ani": 88.0029, "matched_fragments": 1599, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cremoris", "strain": "strain=WS 5106", "accession": "GCA_014230465.1", "taxid": 2724178, "species_taxid": 2724178, "relation_to_type": "type", "validated": true, "ani": 87.793, "matched_fragments": 1571, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pisciculturae", "strain": 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }