{ "type": "genome", "identifier": "GCF_013870495.1", "organism": "Streptomyces shenzhenensis subsp. oryzicola", "title": "Streptomyces shenzhenensis subsp. oryzicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mahasarakham University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013870495.1", "bioproject": "PRJNA224116", "biosample": "SAMN15407416", "wgs_master": "JACBWY000000000.1", "refseq_category": "na", "taxid": "2749088", "species_taxid": "943815", "organism_name": "Streptomyces shenzhenensis subsp. oryzicola", "infraspecific_name": "strain=W18L9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/29", "asm_name": "ASM1387049v1", "asm_submitter": "Mahasarakham University", "gbrs_paired_asm": "GCA_013870495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/870/495/GCF_013870495.1_ASM1387049v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10129717", "genome_size_ungapped": "10129717", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "1608", "contig_count": "1608", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013870495.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "10041", "protein_coding_gene_count": "9077", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-29", "dateModified": "2020-07-29", "datePublished": "2020-07-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces shenzhenensis subsp. oryzicola" ], "sample_taxid": [ "2749088" ], "sample_host_organism": [ "Oryza sativa" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Roiet Province", "Incubator" ], "sample_host_location_id": [], "data_size": "2.757 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 20.0, "max": 38.0 }, "completeness": 95.83, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10129717", "Number of Sequences": "1608", "Longest Sequences (bp)": "69468", "N50 (bp)": "10913", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "8150", "Average Protein Length": "297.2", "Coding Ratio (%)": "71.7", "Number of rRNAs": "3", "Number of tRNAs": "93", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces shenzhenensis subsp. oryzicola", "strain": 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