{ "type": "genome", "identifier": "GCF_013870515.1", "organism": "Streptomyces albidus (ex Kaewkla and Franco 2022)", "title": "Streptomyces albidus (ex Kaewkla and Franco 2022)", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mahasarakham University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013870515.1", "bioproject": "PRJNA224116", "biosample": "SAMN15407413", "wgs_master": "JACBXA000000000.1", "refseq_category": "na", "taxid": "722709", "species_taxid": "722709", "organism_name": "Streptomyces albidus (ex Kaewkla and Franco 2022)", "infraspecific_name": "strain=CAP215", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/29", "asm_name": "ASM1387051v1", "asm_submitter": "Mahasarakham University", "gbrs_paired_asm": "GCA_013870515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/870/515/GCF_013870515.1_ASM1387051v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6657676", "genome_size_ungapped": "6657676", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "497", "contig_count": "497", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-28", "total_gene_count": "6208", "protein_coding_gene_count": "5863", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-29", "dateModified": "2020-07-29", "datePublished": "2020-07-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces albidus (ex Kaewkla and Franco 2022)" ], "sample_taxid": [ "722709" ], "sample_host_organism": [ "Callitris preissii" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Adelaide, Flinders University", "Incubator" ], "sample_host_location_id": [], "data_size": "1.820 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 20.0, "max": 38.0 }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6657676", "Number of Sequences": "497", "Longest Sequences (bp)": "122056", "N50 (bp)": "20451", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "5580", "Average Protein Length": "311.7", "Coding Ratio (%)": "78.4", "Number of rRNAs": "2", "Number of tRNAs": "68", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces albidus (ex Kaewkla 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"accession": "GCA_011045075.1", "taxid": 2711219, "species_taxid": 2711219, "relation_to_type": "type", "validated": true, "ani": 80.9828, "matched_fragments": 863, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces oryzae", "strain": "strain=S16-07", "accession": "GCA_017676365.1", "taxid": 1434886, "species_taxid": 1434886, "relation_to_type": "type", "validated": true, "ani": 80.9216, "matched_fragments": 925, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces reniochalinae", "strain": "strain=LHW50302", "accession": "GCA_003323735.1", "taxid": 2250578, "species_taxid": 2250578, "relation_to_type": "type", "validated": true, "ani": 80.8699, "matched_fragments": 972, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albus", "strain": "strain=NBRC 13014", "accession": "GCA_000813365.1", "taxid": 1888, "species_taxid": 1888, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8143, "matched_fragments": 930, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albus subsp. albus", "strain": "strain=NRRL B-1811", "accession": "GCA_000725885.1", "taxid": 67257, "species_taxid": 1888, "relation_to_type": "suspected-type", "validated": true, "ani": 80.81, "matched_fragments": 929, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces diacarni", "strain": "strain=LHW51701", "accession": "GCA_003323715.1", "taxid": 2800381, "species_taxid": 2800381, "relation_to_type": "type", "validated": true, "ani": 80.6736, "matched_fragments": 988, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces megasporus", "strain": "strain=NRRL B-16372", "accession": "GCA_000718985.1", "taxid": 44060, "species_taxid": 44060, "relation_to_type": "type", "validated": true, "ani": 80.6347, "matched_fragments": 801, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces taklimakanensis", "strain": "strain=TRM43335", "accession": "GCA_009709575.1", "taxid": 2569853, "species_taxid": 2569853, "relation_to_type": "type", "validated": true, "ani": 80.5894, "matched_fragments": 797, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces carminius", "strain": "strain=TRM SA0054", "accession": "GCA_002794255.1", "taxid": 2665496, "species_taxid": 2665496, "relation_to_type": "type", "validated": true, "ani": 80.4407, "matched_fragments": 806, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 80.146, "matched_fragments": 838, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces paromomycinus", "strain": "strain=NBRC 15454", "accession": "GCA_003865155.1", "taxid": 92743, "species_taxid": 92743, "relation_to_type": "type", "validated": true, "ani": 80.1116, "matched_fragments": 914, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 80.0497, "matched_fragments": 846, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 80.0219, "matched_fragments": 942, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_000715845.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 80.0123, "matched_fragments": 900, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 79.9769, "matched_fragments": 922, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013870515.1", "gtdb_species": "s__Streptomyces albidus", "ani": 100.0, "matched_fragments": 1944, "total_fragments": 1966, "gtdb_taxonomy": 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"coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "albidus", "(ex", "Kaewkla", "and", "Franco", "2022)" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }