{ "type": "genome", "identifier": "GCF_013870525.1", "organism": "Amycolatopsis pittospori", "title": "Amycolatopsis pittospori", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mahasarakham University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013870525.1", "bioproject": "PRJNA224116", "biosample": "SAMN15407415", "wgs_master": "JACBXD000000000.1", "refseq_category": "reference genome", "taxid": "2749434", "species_taxid": "2749434", "organism_name": "Amycolatopsis pittospori", "infraspecific_name": "strain=PIP199", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/29", "asm_name": "ASM1387052v1", "asm_submitter": "Mahasarakham University", "gbrs_paired_asm": "GCA_013870525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/870/525/GCF_013870525.1_ASM1387052v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8424322", "genome_size_ungapped": "8424322", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "192", "contig_count": "192", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013870525.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7942", "protein_coding_gene_count": "7766", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-29", "dateModified": "2020-07-29", "datePublished": "2020-07-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis pittospori" ], "sample_taxid": [ "2749434" ], "sample_host_organism": [ "Pittosporum phillyreoides" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Adelaide, Flinders University", "Incubator" ], "sample_host_location_id": [], "data_size": "2.296 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 20.0, "max": 38.0 }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8424322", "Number of Sequences": "192", "Longest Sequences (bp)": "232056", "N50 (bp)": "78720", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "7715", "Average Protein Length": "319.1", "Coding Ratio (%)": "87.7", "Number of rRNAs": "2", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis pittospori", "strain": "strain=PIP199", "accession": "GCA_013870525.1", "taxid": 2749434, "species_taxid": 2749434, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2705, "total_fragments": 2716, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis umgeniensis", "strain": "strain=DSM 45272", "accession": "GCA_014205155.1", "taxid": 336628, "species_taxid": 336628, "relation_to_type": "type", "validated": true, "ani": 90.1737, "matched_fragments": 2237, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis orientalis", "strain": "strain=KCTC 9412", "accession": "GCA_000478275.1", "taxid": 31958, "species_taxid": 31958, "relation_to_type": "type", "validated": true, "ani": 89.9942, "matched_fragments": 2215, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis azurea", "strain": "strain=DSM 43854", "accession": "GCA_000340415.1", "taxid": 36819, "species_taxid": 36819, "relation_to_type": "type", "validated": true, "ani": 89.9412, 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95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thailandensis", "strain": "strain=JCM 16380", "accession": "GCA_002234405.1", "taxid": 589330, "species_taxid": 589330, "relation_to_type": "type", "validated": true, "ani": 89.6136, "matched_fragments": 2082, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis regifaucium", "strain": "strain=GY080", "accession": "GCA_001613935.1", "taxid": 546365, "species_taxid": 546365, "relation_to_type": "type", "validated": true, "ani": 89.6029, "matched_fragments": 2053, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis japonica", "strain": "strain=MG417-CF17", "accession": "GCA_000732925.1", "taxid": 208439, "species_taxid": 208439, "relation_to_type": "type", "validated": true, "ani": 89.4786, "matched_fragments": 2200, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis roodepoortensis", "strain": "strain=DSM 46661", "accession": "GCA_014873915.1", "taxid": 700274, "species_taxid": 700274, "relation_to_type": "type", "validated": true, "ani": 89.472, "matched_fragments": 2149, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis keratiniphila subsp. nogabecina", "strain": "strain=FH 1893", "accession": "GCA_001953855.1", "taxid": 208442, "species_taxid": 129921, "relation_to_type": "type", "validated": true, "ani": 89.3983, "matched_fragments": 2159, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lurida", "strain": "strain=DSM 43134", "accession": "GCA_900105055.1", "taxid": 31959, "species_taxid": 31959, "relation_to_type": "type", "validated": true, "ani": 89.3267, "matched_fragments": 2155, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis keratiniphila subsp. keratiniphila", "strain": "strain=DSM 44409", "accession": "GCA_001620365.2", "taxid": 227715, "species_taxid": 129921, "relation_to_type": "type", "validated": true, "ani": 89.3264, "matched_fragments": 2179, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lurida", "strain": "strain=NRRL 2430", "accession": "GCA_000749465.3", "taxid": 31959, "species_taxid": 31959, "relation_to_type": "type", "validated": true, "ani": 89.3177, "matched_fragments": 2114, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 81.6974, "matched_fragments": 1597, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 79.7967, "matched_fragments": 1033, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 79.0271, "matched_fragments": 956, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora globicatena", "strain": "strain=DSM 44256", "accession": "GCA_024171945.1", "taxid": 103729, "species_taxid": 103729, "relation_to_type": "type", "validated": true, "ani": 77.9717, "matched_fragments": 781, "total_fragments": 2716, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora diospyrosa", "strain": "strain=DSM 44255", 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