{ "tc_result": [ { "organism_name": "Rugamonas brunnea", "strain": "strain=LX20W", "accession": "GCA_014042345.1", "taxid": 2758569, "species_taxid": 2758569, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1889, "total_fragments": 1893, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rugamonas fusca", "strain": "strain=FT3S", "accession": "GCA_014042365.1", "taxid": 2758568, "species_taxid": 2758568, "relation_to_type": "type", "validated": true, "ani": 92.5788, "matched_fragments": 1623, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas apoptosis", "strain": "strain=LX47W", "accession": "GCA_014042355.1", "taxid": 2758570, "species_taxid": 2758570, "relation_to_type": "type", "validated": true, "ani": 91.1765, "matched_fragments": 1586, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas rivuli", "strain": "strain=FT103W", "accession": "GCA_009380165.1", "taxid": 2743358, "species_taxid": 2743358, "relation_to_type": "type", "validated": true, "ani": 84.0766, "matched_fragments": 1238, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rugamonas aquatica", "strain": "strain=FT29W", "accession": "GCA_009380215.1", "taxid": 2743357, "species_taxid": 2743357, "relation_to_type": "type", "validated": true, "ani": 83.9939, "matched_fragments": 1225, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella aceris", "strain": "strain=SAP-35", "accession": "GCA_011090165.1", "taxid": 2703883, "species_taxid": 2703883, "relation_to_type": "type", "validated": true, "ani": 83.4605, "matched_fragments": 1164, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella alba", "strain": "strain=FT9W", "accession": "GCA_009674495.1", "taxid": 2666081, "species_taxid": 2666081, "relation_to_type": "type", "validated": true, "ani": 83.1695, "matched_fragments": 1134, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella callida", "strain": "strain=DN04", "accession": "GCA_004614165.1", "taxid": 2561932, "species_taxid": 2561932, "relation_to_type": "type", "validated": true, "ani": 83.0178, "matched_fragments": 1083, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella radicis", "strain": "strain=KCTC 22382", "accession": "GCA_009720825.1", "taxid": 551988, "species_taxid": 551988, "relation_to_type": "type", "validated": true, "ani": 82.8347, "matched_fragments": 1138, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella phyllosphaerae", "strain": "strain=T54", "accession": "GCA_001758785.1", "taxid": 762836, "species_taxid": 762836, "relation_to_type": "type", "validated": true, "ani": 82.5442, "matched_fragments": 1004, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia cavernae", "strain": "strain=K1S02-61", "accession": "GCA_003590855.1", "taxid": 2320864, "species_taxid": 2320864, "relation_to_type": "type", "validated": true, "ani": 81.7087, "matched_fragments": 784, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella albidiflava", "strain": "strain=DSM 17472", "accession": "GCA_004322755.1", "taxid": 321983, "species_taxid": 321983, "relation_to_type": "type", "validated": true, "ani": 81.336, "matched_fragments": 1028, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella albidiflava", "strain": "strain=KCTC 12343", "accession": "GCA_014651415.1", "taxid": 321983, "species_taxid": 321983, "relation_to_type": "type", "validated": true, "ani": 81.2515, "matched_fragments": 1019, "total_fragments": 1893, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014042345.1", "gtdb_species": "s__LX47W sp014042345", "ani": 100.0, "matched_fragments": 1889, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__LX47W", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014042365.1", "gtdb_species": "s__LX47W sp014042365", "ani": 92.5564, "matched_fragments": 1625, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__LX47W", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014042355.1", "gtdb_species": "s__LX47W sp014042355", "ani": 91.1519, "matched_fragments": 1589, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__LX47W", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003416985.1", "gtdb_species": "s__Duganella sp003416985", "ani": 84.4408, "matched_fragments": 1282, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "95.41", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000381565.1", "gtdb_species": "s__Duganella sp000381565", "ani": 84.1845, "matched_fragments": 1295, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.03", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013375995.1", "gtdb_species": "s__Duganella sp013375995", "ani": 84.0404, "matched_fragments": 1239, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009380215.1", "gtdb_species": "s__Duganella sp009380215", "ani": 84.0013, "matched_fragments": 1225, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001425045.1", "gtdb_species": "s__Pseudoduganella sp001425045", "ani": 83.2551, "matched_fragments": 1185, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009674495.1", "gtdb_species": "s__Duganella alba", "ani": 83.1189, "matched_fragments": 1140, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.1471, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004614165.1", "gtdb_species": "s__Duganella callida", "ani": 82.9835, "matched_fragments": 1089, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001423125.1", "gtdb_species": "s__Duganella sp001423125", "ani": 82.7397, "matched_fragments": 1004, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Duganella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002428015.1", "gtdb_species": "s__Massilia sp002428015", "ani": 81.7447, "matched_fragments": 911, "total_fragments": 1893, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }