{ "type": "genome", "identifier": "GCF_014062315.1", "organism": "Gelidibacter maritimus", "title": "Gelidibacter maritimus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University,Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014062315.1", "bioproject": "PRJNA224116", "biosample": "SAMN15667085", "wgs_master": "JACGLT000000000.1", "refseq_category": "reference genome", "taxid": "2761487", "species_taxid": "2761487", "organism_name": "Gelidibacter maritimus", "infraspecific_name": "strain=F6074", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/04", "asm_name": "ASM1406231v1", "asm_submitter": "Shandong University,Weihai", "gbrs_paired_asm": "GCA_014062315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/062/315/GCF_014062315.1_ASM1406231v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4707621", "genome_size_ungapped": "4707321", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014062315.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3921", "protein_coding_gene_count": "3849", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-04", "dateModified": "2020-08-04", "datePublished": "2020-08-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Gelidibacter maritimus" ], "sample_taxid": [ "2761487" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Weihai" ], "sample_host_location_id": [], "data_size": "1.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4707621", "Number of Sequences": "70", "Longest Sequences (bp)": "545684", "N50 (bp)": "271603", "Gap Ratio (%)": "0.006373", "GCcontent (%)": "37.8", "Number of CDSs": "3802", "Average Protein Length": "348.7", "Coding Ratio (%)": "84.5", "Number of rRNAs": "6", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gelidibacter maritimus", "strain": "strain=F6074", "accession": "GCA_014062315.1", "taxid": 2761487, "species_taxid": 2761487, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1538, "total_fragments": 1543, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gelidibacter pelagius", "strain": "strain=DF109", "accession": "GCA_017581925.1", "taxid": 2819985, "species_taxid": 2819985, "relation_to_type": "type", "validated": true, "ani": 85.4041, "matched_fragments": 1153, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter japonicus", "strain": "strain=Bio7-1", "accession": "GCA_010725055.1", "taxid": 1962232, "species_taxid": 1962232, "relation_to_type": "type", "validated": true, "ani": 84.3993, "matched_fragments": 1072, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter gilvus", "strain": "strain=IC158", "accession": "GCA_004115975.1", "taxid": 59602, "species_taxid": 59602, "relation_to_type": "type", "validated": true, "ani": 82.5403, "matched_fragments": 1028, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter mesophilus", "strain": "strain=DSM 14095", "accession": "GCA_000423005.1", "taxid": 169050, "species_taxid": 169050, "relation_to_type": "type", "validated": true, "ani": 79.9542, "matched_fragments": 767, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter algens", "strain": "strain=DSM 12408", "accession": "GCA_003259265.1", "taxid": 49280, "species_taxid": 49280, "relation_to_type": "type", "validated": true, "ani": 78.9803, "matched_fragments": 588, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter sediminis", "strain": "strain=DSM 28135", "accession": "GCA_004364975.1", "taxid": 1608710, "species_taxid": 1608710, "relation_to_type": "type", "validated": true, "ani": 78.6421, "matched_fragments": 510, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.1832, "matched_fragments": 151, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 76.8072, "matched_fragments": 105, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.7444, "matched_fragments": 141, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 76.636, "matched_fragments": 67, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 76.6212, "matched_fragments": 109, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.5299, "matched_fragments": 127, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola algicola", "strain": "strain=Gy8", "accession": "GCA_007997385.1", "taxid": 1719036, "species_taxid": 1719036, "relation_to_type": "type", "validated": true, "ani": 76.4906, "matched_fragments": 123, "total_fragments": 1543, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014062315.1", "gtdb_species": "s__Gelidibacter sp014062315", "ani": 100.0, "matched_fragments": 1538, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017581925.1", "gtdb_species": "s__Gelidibacter sp017581925", "ani": 85.4041, "matched_fragments": 1153, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010725055.1", "gtdb_species": "s__Gelidibacter japonicus", "ani": 84.392, "matched_fragments": 1074, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004115975.1", "gtdb_species": "s__Gelidibacter gilvus", "ani": 82.5403, "matched_fragments": 1028, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423005.1", "gtdb_species": "s__Gelidibacter mesophilus", "ani": 79.9508, "matched_fragments": 767, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001678675.1", "gtdb_species": "s__Gelidibacter algens", "ani": 79.0732, "matched_fragments": 565, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004364975.1", "gtdb_species": "s__Gelidibacter sediminis", "ani": 78.6379, "matched_fragments": 510, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gelidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114265.1", "gtdb_species": "s__Flaviramulus basaltis", "ani": 76.7378, "matched_fragments": 151, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flaviramulus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007997385.1", "gtdb_species": "s__Seonamhaeicola algicola", "ani": 76.4877, "matched_fragments": 122, "total_fragments": 1543, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.601, "doubling_h": null, "growth_tmp": 20.8, "optimum_tmp": 17.666, "optimum_ph": null, "genome_size": 4151575.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gelidibacter", "maritimus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }