{ "type": "genome", "identifier": "GCF_014077625.1", "organism": "Sediminihaliea albiluteola", "title": "Sediminihaliea albiluteola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014077625.1", "bioproject": "PRJNA224116", "biosample": "SAMN15644194", "wgs_master": "JACFXU000000000.1", "refseq_category": "reference genome", "taxid": "2758564", "species_taxid": "2758564", "organism_name": "Sediminihaliea albiluteola", "infraspecific_name": "strain=F7430", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/05", "asm_name": "ASM1407762v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_014077625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/077/625/GCF_014077625.1_ASM1407762v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3304636", "genome_size_ungapped": "3304636", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014077625.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2967", "protein_coding_gene_count": "2891", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-05", "dateModified": "2020-08-05", "datePublished": "2020-08-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Sediminihaliea albiluteola" ], "sample_taxid": [ "2758564" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.943 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3304636", "Number of Sequences": "18", "Longest Sequences (bp)": "1303383", "N50 (bp)": "932827", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.6", "Number of CDSs": "2914", "Average Protein Length": "336.8", "Coding Ratio (%)": "89.1", "Number of rRNAs": "10", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sediminihaliea albiluteola", "strain": "strain=F7430", "accession": "GCA_014077625.1", "taxid": 2758564, "species_taxid": 2758564, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1092, "total_fragments": 1094, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kineobactrum salinum", "strain": "strain=M2", "accession": "GCA_010669285.1", "taxid": 2708301, "species_taxid": 2708301, "relation_to_type": "type", "validated": true, "ani": 77.6379, "matched_fragments": 110, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea maris", "strain": "strain=HSLHS9", "accession": "GCA_008064665.1", "taxid": 2716870, "species_taxid": 2716870, "relation_to_type": "type", "validated": true, "ani": 77.6209, "matched_fragments": 175, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea aestuarii", "strain": "strain=S2-26", "accession": "GCA_008064635.1", "taxid": 1852021, "species_taxid": 1852021, "relation_to_type": "type", "validated": true, "ani": 77.6091, "matched_fragments": 192, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea mediterranea", "strain": "strain=DSM 21924", "accession": "GCA_003402235.1", "taxid": 651086, "species_taxid": 651086, "relation_to_type": "type", "validated": true, "ani": 77.5992, "matched_fragments": 211, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliea alexandrii", "strain": "strain=LZ-16-2", "accession": "GCA_003719295.1", "taxid": 2448162, "species_taxid": 2448162, "relation_to_type": "type", "validated": true, "ani": 77.4108, "matched_fragments": 107, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seongchinamella sediminis", "strain": "strain=U0301", "accession": "GCA_003457605.1", "taxid": 2283635, "species_taxid": 2283635, "relation_to_type": "type", "validated": true, "ani": 77.3967, "matched_fragments": 105, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliea salexigens", "strain": "strain=DSM 19537", "accession": "GCA_000423125.1", "taxid": 287487, "species_taxid": 287487, "relation_to_type": "type", "validated": true, "ani": 77.3626, "matched_fragments": 113, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer celer", "strain": "strain=KCTC 12973", "accession": "GCA_020991125.1", "taxid": 435905, "species_taxid": 435905, "relation_to_type": "type", "validated": true, "ani": 77.2495, "matched_fragments": 53, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halioglobus pacificus", "strain": "strain=KCTC 23430", "accession": "GCA_014652275.1", "taxid": 930806, "species_taxid": 930806, "relation_to_type": "type", "validated": true, "ani": 77.1332, "matched_fragments": 81, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromatocurvus halotolerans", "strain": "strain=DSM 23344", "accession": "GCA_004340525.1", "taxid": 1132028, "species_taxid": 1132028, "relation_to_type": "type", "validated": true, "ani": 76.5998, "matched_fragments": 68, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromatocurvus halotolerans", "strain": "strain=DSM 23344", "accession": "GCA_003428685.1", "taxid": 1132028, "species_taxid": 1132028, "relation_to_type": "type", "validated": true, "ani": 76.5497, "matched_fragments": 71, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014077625.1", "gtdb_species": "s__Parahaliea sp014077625", "ani": 100.0, "matched_fragments": 1092, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_000158155.1", "gtdb_species": "s__Congregibacter sp000158155", "ani": 78.0641, "matched_fragments": 72, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Congregibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010669285.1", "gtdb_species": "s__Kineobactrum salinum", "ani": 77.6255, "matched_fragments": 112, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Kineobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008064665.1", "gtdb_species": "s__Parahaliea maris", "ani": 77.6209, "matched_fragments": 175, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003402235.1", "gtdb_species": "s__Parahaliea mediterranea", "ani": 77.6137, "matched_fragments": 210, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008064635.1", "gtdb_species": "s__Parahaliea aestuarii", "ani": 77.6109, "matched_fragments": 191, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017255185.1", "gtdb_species": "s__Parahaliea mediterranea_A", "ani": 77.5097, "matched_fragments": 194, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003719295.1", "gtdb_species": "s__Haliea alexandrii", "ani": 77.4108, "matched_fragments": 107, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Haliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423125.1", "gtdb_species": "s__Haliea salexigens", "ani": 77.3582, "matched_fragments": 113, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Haliea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_014652275.1", "gtdb_species": "s__Halioglobus_A pacificus", "ani": 77.1315, "matched_fragments": 80, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002699145.1", "gtdb_species": "s__Halioglobus sp002699145", "ani": 76.637, "matched_fragments": 81, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016744355.1", "gtdb_species": "s__Halioglobus sp016744355", "ani": 76.6263, "matched_fragments": 55, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004340525.1", "gtdb_species": "s__Chromatocurvus halotolerans", "ani": 76.6094, "matched_fragments": 69, "total_fragments": 1094, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Chromatocurvus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Sediminihaliea", "albiluteola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }