{ "type": "genome", "identifier": "GCF_014107495.1", "organism": "Cohnella cholangitidis", "title": "Cohnella cholangitidis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Centers for Disease Control & Prevention (KCDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_014107495.1", "bioproject": "PRJNA224116", "biosample": "SAMN12340927", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2598458", "species_taxid": "2598458", "organism_name": "Cohnella cholangitidis", "infraspecific_name": "strain=1605-214", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/08/07", "asm_name": "ASM1410749v1", "asm_submitter": "Korea Centers for Disease Control & Prevention (KCDC)", "gbrs_paired_asm": "GCA_014107495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/014/107/495/GCF_014107495.1_ASM1410749v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6408853", "genome_size_ungapped": "6408853", "gc_percent": "51.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_014107495.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5990", "protein_coding_gene_count": "5683", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-08-07", "dateModified": "2020-08-07", "datePublished": "2020-08-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella cholangitidis" ], "sample_taxid": [ "2598458" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "cholangitis" ], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.815 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6408853", "Number of Sequences": "1", "Longest Sequences (bp)": "6408853", "N50 (bp)": "6408853", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.2", "Number of CDSs": "6041", "Average Protein Length": "315.6", "Coding Ratio (%)": "89.3", "Number of rRNAs": "24", "Number of tRNAs": "69", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella cholangitidis", "strain": "strain=1605-214", "accession": "GCA_014107495.1", "taxid": 2598458, "species_taxid": 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79.8624, "matched_fragments": 645, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella endophytica", "strain": "strain=M2MS4P-1", "accession": "GCA_003628305.1", "taxid": 2419778, "species_taxid": 2419778, "relation_to_type": "type", "validated": true, "ani": 79.6147, "matched_fragments": 633, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella terricola", "strain": "strain=G13", "accession": "GCA_007786475.1", "taxid": 1289167, "species_taxid": 1289167, "relation_to_type": "type", "validated": true, "ani": 79.1965, "matched_fragments": 565, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella panacarvi", "strain": "strain=Gsoil 349", "accession": "GCA_000515335.1", "taxid": 400776, "species_taxid": 400776, "relation_to_type": "type", "validated": true, "ani": 78.3244, "matched_fragments": 367, "total_fragments": 2136, 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{ "organism_name": "Paenibacillus sinensis", "strain": "strain=HN-1", "accession": "GCA_019904155.1", "taxid": 2834413, "species_taxid": 2834413, "relation_to_type": "type", "validated": true, "ani": 76.7401, "matched_fragments": 73, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizophilus", "strain": "strain=7197", "accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 76.5528, "matched_fragments": 93, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 76.3271, "matched_fragments": 106, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cohnella", "cholangitidis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }